rs16932309

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0146 (4365/29856,GnomAD)
A=0179 (5220/29118,TOPMED)
A=0168 (841/5008,1000G)
A=0043 (167/3854,ALSPAC)
A=0047 (173/3708,TWINSUK)
chr10:31291676 (GRCh38.p7) (10p11.22)
AD
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.31291676C>A
GRCh37.p13 chr 10NC_000010.10:g.31580605C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.635A=0.365
1000GenomesAmericanSub694C=0.930A=0.070
1000GenomesEast AsianSub1008C=0.839A=0.161
1000GenomesEuropeSub1006C=0.943A=0.057
1000GenomesGlobalStudy-wide5008C=0.832A=0.168
1000GenomesSouth AsianSub978C=0.900A=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.957A=0.043
The Genome Aggregation DatabaseAfricanSub8700C=0.650A=0.350
The Genome Aggregation DatabaseAmericanSub834C=0.960A=0.040
The Genome Aggregation DatabaseEast AsianSub1580C=0.797A=0.203
The Genome Aggregation DatabaseEuropeSub18440C=0.948A=0.051
The Genome Aggregation DatabaseGlobalStudy-wide29856C=0.853A=0.146
The Genome Aggregation DatabaseOtherSub302C=0.950A=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.820A=0.179
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.953A=0.047
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169323090.000691alcohol dependence21314694

eQTL of rs16932309 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16932309 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr103160678531606855E06826180
chr103160388731604036E06923282
chr103160429331604429E06923688
chr103160446331604751E06923858
chr103160316731603217E07022562
chr103160331331603387E07022708
chr103160340831603687E07022803
chr103160370631603756E07023101
chr103160388731604036E07023282
chr103160429331604429E07023688
chr103160446331604751E07023858
chr103160678531606855E07426180
chr103160678531606855E08126180
chr103161282231612894E08132217





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr103160691031611113E06726305
chr103160691031611113E06826305
chr103160691031611113E06926305
chr103160691031611113E07026305
chr103160691031611113E07126305
chr103160691031611113E07226305
chr103160691031611113E07326305
chr103160691031611113E07426305
chr103160691031611113E08126305
chr103160691031611113E08226305