rs16934315

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0093 (2785/29914,GnomAD)
C=0066 (1945/29118,TOPMED)
C=0098 (489/5008,1000G)
C=0094 (364/3854,ALSPAC)
C=0091 (338/3708,TWINSUK)
chr11:40071243 (GRCh38.p7) (11p12)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.40071243T>C
GRCh37.p13 chr 11NC_000011.9:g.40092793T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.978C=0.022
1000GenomesAmericanSub694T=0.870C=0.130
1000GenomesEast AsianSub1008T=0.770C=0.230
1000GenomesEuropeSub1006T=0.909C=0.091
1000GenomesGlobalStudy-wide5008T=0.902C=0.098
1000GenomesSouth AsianSub978T=0.960C=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.906C=0.094
The Genome Aggregation DatabaseAfricanSub8726T=0.963C=0.037
The Genome Aggregation DatabaseAmericanSub838T=0.880C=0.120
The Genome Aggregation DatabaseEast AsianSub1576T=0.757C=0.243
The Genome Aggregation DatabaseEuropeSub18472T=0.895C=0.105
The Genome Aggregation DatabaseGlobalStudy-wide29914T=0.906C=0.093
The Genome Aggregation DatabaseOtherSub302T=0.890C=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.933C=0.066
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.909C=0.091
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169343150.00013alcohol dependence20201924

eQTL of rs16934315 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16934315 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr114014029140140371E06747498
chr114014048440140682E06747691
chr114014072640140945E06747933
chr114014048440140682E06947691
chr114014072640140945E06947933
chr114014097640141050E06948183
chr114014029140140371E07147498
chr114014048440140682E07147691
chr114014072640140945E07147933
chr114014048440140682E07247691
chr114014048440140682E07447691
chr114014072640140945E07447933
chr114014097640141050E07448183