rs16934439

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0129 (3866/29962,GnomAD)
G=0131 (3832/29118,TOPMED)
G=0111 (555/5008,1000G)
G=0112 (433/3854,ALSPAC)
G=0112 (415/3708,TWINSUK)
chr9:16321580 (GRCh38.p7) (9p22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
53 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.16321580T>G
GRCh37.p13 chr 9NC_000009.11:g.16321578T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.821G=0.179
1000GenomesAmericanSub694T=0.880G=0.120
1000GenomesEast AsianSub1008T=0.979G=0.021
1000GenomesEuropeSub1006T=0.879G=0.121
1000GenomesGlobalStudy-wide5008T=0.889G=0.111
1000GenomesSouth AsianSub978T=0.900G=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.888G=0.112
The Genome Aggregation DatabaseAfricanSub8718T=0.824G=0.176
The Genome Aggregation DatabaseAmericanSub838T=0.860G=0.140
The Genome Aggregation DatabaseEast AsianSub1620T=0.968G=0.032
The Genome Aggregation DatabaseEuropeSub18484T=0.885G=0.114
The Genome Aggregation DatabaseGlobalStudy-wide29962T=0.871G=0.129
The Genome Aggregation DatabaseOtherSub302T=0.810G=0.190
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.868G=0.131
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.888G=0.112
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169344390.000584alcohol dependence20201924

eQTL of rs16934439 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16934439 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr91631712716317820E068-3758
chr91631800816318059E068-3519
chr91631834416318425E068-3153
chr91631856816318843E068-2735
chr91631919316319243E068-2335
chr91627632916276490E070-45088
chr91627693816276988E070-44590
chr91627700316277105E070-44473
chr91629444916294600E070-26978
chr91629466416294755E070-26823
chr91630902416309104E070-12474
chr91630915016311140E070-10438
chr91631577016316330E070-5248
chr91631633916316739E070-4839
chr91631681216317122E070-4456
chr91631712716317820E070-3758
chr91631800816318059E070-3519
chr91631834416318425E070-3153
chr91631856816318843E070-2735
chr91631919316319243E070-2335
chr91631934016319390E070-2188
chr91633340616333456E07011828
chr91633353616333697E07011958
chr91633370916334089E07012131
chr91636225316362303E07040675
chr91631800816318059E074-3519
chr91631834416318425E074-3153
chr91627320416273415E081-48163
chr91627632916276490E081-45088
chr91627693816276988E081-44590
chr91627700316277105E081-44473
chr91627756416277851E081-43727
chr91630915016311140E081-10438
chr91631543516315594E081-5984
chr91631562016315732E081-5846
chr91631577016316330E081-5248
chr91631633916316739E081-4839
chr91631681216317122E081-4456
chr91631712716317820E081-3758
chr91631800816318059E081-3519
chr91631856816318843E081-2735
chr91633340616333456E08111828
chr91633353616333697E08111958
chr91627320416273415E082-48163
chr91627632916276490E082-45088
chr91630902416309104E082-12474
chr91630915016311140E082-10438
chr91631681216317122E082-4456
chr91631712716317820E082-3758
chr91631800816318059E082-3519
chr91631834416318425E082-3153
chr91633353616333697E08211958
chr91633370916334089E08212131