SNP Detail Info-rs16936012

Molecule type	Change	Amino acid[Codon]	SO Term
SULF1 transcript variant 4	NM_001128204.1:c.	N/A	Intron Variant
SULF1 transcript variant 1	NM_001128205.1:c.	N/A	Intron Variant
SULF1 transcript variant 2	NM_001128206.1:c.	N/A	Intron Variant
SULF1 transcript variant 3	NM_015170.2:c.	N/A	Intron Variant
SULF1 transcript variant 5	NR_132437.1:n.	N/A	Genic Upstream Transcript Variant
SULF1 transcript variant X1	XM_006716438.2:c.	N/A	Intron Variant
SULF1 transcript variant X3	XM_006716439.2:c.	N/A	Intron Variant
SULF1 transcript variant X2	XM_006716440.3:c.	N/A	Intron Variant
SULF1 transcript variant X4	XM_011517494.1:c.	N/A	Intron Variant
SULF1 transcript variant X8	XM_011517495.1:c.	N/A	Intron Variant
SULF1 transcript variant X9	XM_017013250.1:c.	N/A	Intron Variant
SULF1 transcript variant X5	XM_006716441.1:c.	N/A	Genic Upstream Transcript Variant
SULF1 transcript variant X11	XM_006716442.1:c.	N/A	Genic Upstream Transcript Variant
SULF1 transcript variant X7	XR_001745503.1:n.	N/A	Intron Variant
SULF1 transcript variant X6	XR_928764.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.884	T=0.116
1000Genomes	American	Sub	694	G=0.850	T=0.150
1000Genomes	East Asian	Sub	1008	G=0.598	T=0.402
1000Genomes	Europe	Sub	1006	G=0.970	T=0.030
1000Genomes	Global	Study-wide	5008	G=0.846	T=0.154
1000Genomes	South Asian	Sub	978	G=0.920	T=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.984	T=0.016
The Genome Aggregation Database	African	Sub	8724	G=0.889	T=0.111
The Genome Aggregation Database	American	Sub	838	G=0.850	T=0.150
The Genome Aggregation Database	East Asian	Sub	1598	G=0.561	T=0.439
The Genome Aggregation Database	Europe	Sub	18502	G=0.964	T=0.035
The Genome Aggregation Database	Global	Study-wide	29964	G=0.918	T=0.081
The Genome Aggregation Database	Other	Sub	302	G=0.980	T=0.020
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.988	T=0.012

PMID	Title	Author	Journal
22096494	A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.	Zuo L	PLoS One

SNP ID	p-value	Traits	Study
rs16936012	7.3E-05	alcohol dependence	22096494

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr8	72899881	72900003	E068	-35822
chr8	72900035	72900340	E068	-35485
chr8	72900404	72900505	E068	-35320
chr8	72900629	72900709	E068	-35116
chr8	72900743	72900797	E068	-35028
chr8	72930853	72931155	E068	-4670
chr8	72900035	72900340	E074	-35485
chr8	72893171	72893483	E081	-42342
chr8	72893613	72893811	E081	-42014
chr8	72893838	72893888	E081	-41937
chr8	72893908	72893981	E081	-41844
chr8	72910361	72910484	E081	-25341
chr8	72910515	72910621	E081	-25204
chr8	72910973	72911068	E081	-24757
chr8	72911207	72911340	E081	-24485
chr8	72911409	72911632	E081	-24193
chr8	72911637	72911931	E081	-23894
chr8	72912530	72912580	E081	-23245
chr8	72912634	72912925	E081	-22900
chr8	72912976	72913086	E081	-22739
chr8	72913386	72913457	E081	-22368
chr8	72913498	72913557	E081	-22268
chr8	72914451	72914634	E081	-21191
chr8	72914640	72914700	E081	-21125
chr8	72914817	72914871	E081	-20954
chr8	72914960	72915043	E081	-20782
chr8	72922524	72922578	E081	-13247
chr8	72893613	72893811	E082	-42014
chr8	72893838	72893888	E082	-41937
chr8	72893908	72893981	E082	-41844
chr8	72913386	72913457	E082	-22368
chr8	72920825	72920922	E082	-14903
chr8	72920949	72921012	E082	-14813
chr8	72921510	72922467	E082	-13358

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr8	72916516	72918120	E067	-17705
chr8	72916516	72918120	E068	-17705
chr8	72916516	72918120	E069	-17705
chr8	72916516	72918120	E071	-17705
chr8	72916516	72918120	E072	-17705
chr8	72916516	72918120	E073	-17705
chr8	72916516	72918120	E082	-17705

rs16936012