rs16937688

Homo sapiens
C>T
ZNF37A : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0007 (209/29984,GnomAD)
T=0010 (318/29118,TOPMED)
T=0006 (32/5008,1000G)
chr10:38127545 (GRCh38.p7) (10p11.1)
AD
GWASdb2
1   publication(s)
See rs on genome
18 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.38127545C>T
GRCh37.p13 chr 10NC_000010.10:g.38416473C>T

Gene: ZNF37A, zinc finger protein 37A(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF37A transcript variant 14NM_001324256.1:c.N/AIntron Variant
ZNF37A transcript variant 15NM_001324257.1:c.N/AIntron Variant
ZNF37A transcript variant 16NM_001324258.1:c.N/AIntron Variant
ZNF37A transcript variant 1NM_001007094.2:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 3NM_001178101.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 4NM_001324245.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 5NM_001324246.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 6NM_001324247.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 7NM_001324248.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 8NM_001324249.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 9NM_001324250.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 10NM_001324251.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 11NM_001324252.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 12NM_001324253.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 13NM_001324254.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 17NM_001324259.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 18NM_001324260.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 19NM_001324261.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 20NM_001324262.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant 2NM_003421.2:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X8XM_017016621.1:c.N/AIntron Variant
ZNF37A transcript variant X7XM_005252586.3:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X1XM_011519656.2:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X2XM_011519657.2:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X3XM_011519658.2:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X4XM_017016618.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X5XM_017016619.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X6XM_017016620.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X9XM_017016622.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X10XM_017016623.1:c.N/AGenic Downstream Transcript Variant
ZNF37A transcript variant X11XM_017016624.1:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.977T=0.023
1000GenomesAmericanSub694C=1.000T=0.000
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=1.000T=0.000
1000GenomesGlobalStudy-wide5008C=0.994T=0.006
1000GenomesSouth AsianSub978C=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8720C=0.976T=0.024
The Genome Aggregation DatabaseAmericanSub838C=1.000T=0.000
The Genome Aggregation DatabaseEast AsianSub1622C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18502C=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29984C=0.993T=0.007
The Genome Aggregation DatabaseOtherSub302C=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.989T=0.010
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169376880.00072alcohol dependence21314694

eQTL of rs16937688 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16937688 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr103843624738437465E06719774
chr103843757738437697E06721104
chr103838240238382494E069-33979
chr103843624738437465E06919774
chr103843757738437697E06921104
chr103838240238382494E071-33979
chr103843568138435761E07119208
chr103843591738436194E07119444
chr103843624738437465E07119774
chr103843757738437697E07121104
chr103843568138435761E07219208
chr103843591738436194E07219444
chr103843624738437465E07219774
chr103843757738437697E07221104
chr103838464638384735E073-31738
chr103838240238382494E074-33979
chr103843591738436194E07419444
chr103838240238382494E081-33979







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr103838261238384294E067-32179
chr103838261238384294E068-32179
chr103838261238384294E069-32179
chr103838261238384294E070-32179
chr103838261238384294E071-32179
chr103838261238384294E072-32179
chr103838261238384294E073-32179
chr103838261238384294E074-32179
chr103838261238384294E081-32179
chr103838261238384294E082-32179