rs16943694

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0009 (288/29980,GnomAD)
G=0016 (482/29118,TOPMED)
G=0014 (69/5008,1000G)
chr16:75932872 (GRCh38.p7) (16q23.1)
AD
GWASdb2
1   publication(s)
See rs on genome
107 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.75932872T>G
GRCh37.p13 chr 16NC_000016.9:g.75966770T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.948G=0.052
1000GenomesAmericanSub694T=1.000G=0.000
1000GenomesEast AsianSub1008T=1.000G=0.000
1000GenomesEuropeSub1006T=1.000G=0.000
1000GenomesGlobalStudy-wide5008T=0.986G=0.014
1000GenomesSouth AsianSub978T=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8720T=0.967G=0.033
The Genome Aggregation DatabaseAmericanSub838T=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1618T=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18502T=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29980T=0.990G=0.009
The Genome Aggregation DatabaseOtherSub302T=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.983G=0.016
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169436940.000683alcohol dependence20201924

eQTL of rs16943694 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16943694 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr167597890875979004E06712138
chr167597907675979261E06712306
chr167598176675982194E06714996
chr167598226775982317E06715497
chr167598233175982449E06715561
chr167598305975983109E06716289
chr167599968275999793E06732912
chr167599991976000314E06733149
chr167601143776011842E06744667
chr167597497675975020E0688206
chr167597531075975360E0688540
chr167597547775975569E0688707
chr167598176675982194E06814996
chr167598226775982317E06815497
chr167598233175982449E06815561
chr167598305975983109E06816289
chr167599968275999793E06832912
chr167599991976000314E06833149
chr167600088476000944E06834114
chr167600967076009753E06842900
chr167597276375972923E0695993
chr167597296075973083E0696190
chr167597497675975020E0698206
chr167597531075975360E0698540
chr167597547775975569E0698707
chr167598176675982194E06914996
chr167598226775982317E06915497
chr167598233175982449E06915561
chr167598251675982751E06915746
chr167598305975983109E06916289
chr167598374075983920E06916970
chr167599968275999793E06932912
chr167599991976000314E06933149
chr167600967076009753E06942900
chr167601143776011842E06944667
chr167601194276012029E06945172
chr167595361875953854E070-12916
chr167598176675982194E07014996
chr167598226775982317E07015497
chr167598233175982449E07015561
chr167598251675982751E07015746
chr167598305975983109E07016289
chr167598374075983920E07016970
chr167600625376006439E07039483
chr167601458076014624E07047810
chr167601555276015602E07048782
chr167601665476016694E07049884
chr167595246975952519E071-14251
chr167597497675975020E0718206
chr167597531075975360E0718540
chr167597547775975569E0718707
chr167597633575976385E0719565
chr167597639575976487E0719625
chr167597696175977119E07110191
chr167598067875980718E07113908
chr167598077675980889E07114006
chr167598176675982194E07114996
chr167598226775982317E07115497
chr167598233175982449E07115561
chr167598251675982751E07115746
chr167598305975983109E07116289
chr167598374075983920E07116970
chr167599968275999793E07132912
chr167599991976000314E07133149
chr167600088476000944E07134114
chr167600967076009753E07142900
chr167601034676010840E07143576
chr167601143776011842E07144667
chr167595332975953369E072-13401
chr167595361875953854E072-12916
chr167597890875979004E07212138
chr167597907675979261E07212306
chr167598176675982194E07214996
chr167598226775982317E07215497
chr167598233175982449E07215561
chr167598305975983109E07216289
chr167598374075983920E07216970
chr167599968275999793E07232912
chr167599991976000314E07233149
chr167600088476000944E07234114
chr167601143776011842E07244667
chr167595246975952519E074-14251
chr167595270975952759E074-14011
chr167595332975953369E074-13401
chr167597497675975020E0748206
chr167597531075975360E0748540
chr167597547775975569E0748707
chr167598176675982194E07414996
chr167598226775982317E07415497
chr167598233175982449E07415561
chr167598251675982751E07415746
chr167598305975983109E07416289
chr167598374075983920E07416970
chr167599968275999793E07432912
chr167599991976000314E07433149
chr167600967076009753E07442900
chr167601143776011842E07444667
chr167601194276012029E07445172
chr167597531075975360E0818540
chr167597547775975569E0818707
chr167597633575976385E0819565
chr167597639575976487E0819625
chr167597696175977119E08110191
chr167597730175977412E08110531
chr167597758475977705E08110814
chr167597776575977964E08110995
chr167597801975978305E08111249