SNP Detail Info-rs16947824

Molecule type	Change	Amino acid[Codon]	SO Term
DDX5 transcript variant 1	NM_001320595.1:c.	N/A	Intron Variant
DDX5 transcript variant 3	NM_001320596.1:c.	N/A	Intron Variant
DDX5 transcript variant 4	NM_001320597.1:c.	N/A	Intron Variant
DDX5 transcript variant 2	NM_004396.4:c.	N/A	Intron Variant

Molecule type	Change	Amino acid[Codon]	SO Term
CEP95 transcript variant 2	NM_001316990.1:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant 1	NM_138363.2:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant 3	NR_133644.1:n.	N/A	Upstream Transcript Variant
CEP95 transcript variant X1	XM_005257779.3:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X4	XM_005257780.2:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X4	XM_006722166.3:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X9	XM_011525458.2:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X3	XM_017025287.1:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X5	XM_017025288.1:c.	N/A	Upstream Transcript Variant
CEP95 transcript variant X7	XR_001752675.1:n.	N/A	Upstream Transcript Variant
CEP95 transcript variant X7	XR_001752676.1:n.	N/A	Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.960	A=0.040
1000Genomes	American	Sub	694	G=0.870	A=0.130
1000Genomes	East Asian	Sub	1008	G=0.973	A=0.027
1000Genomes	Europe	Sub	1006	G=0.962	A=0.038
1000Genomes	Global	Study-wide	5008	G=0.952	A=0.048
1000Genomes	South Asian	Sub	978	G=0.970	A=0.030
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.965	A=0.035
The Genome Aggregation Database	African	Sub	8702	G=0.960	A=0.040
The Genome Aggregation Database	American	Sub	836	G=0.870	A=0.130
The Genome Aggregation Database	East Asian	Sub	1622	G=0.967	A=0.033
The Genome Aggregation Database	Europe	Sub	18474	G=0.949	A=0.050
The Genome Aggregation Database	Global	Study-wide	29936	G=0.951	A=0.048
The Genome Aggregation Database	Other	Sub	302	G=0.960	A=0.040
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.958	A=0.041
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.964	A=0.036

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs16947824	0.00000793	alcohol and nictotine co-dependence	20158304
rs16947824	0.0000143	alcohol dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr17	261323	261907	E067	-47327
chr17	261981	262046	E067	-47188
chr17	261323	261907	E068	-47327
chr17	261981	262046	E068	-47188
chr17	261323	261907	E069	-47327
chr17	261981	262046	E069	-47188
chr17	261323	261907	E070	-47327
chr17	277534	277610	E070	-31624
chr17	277649	277834	E070	-31400
chr17	261323	261907	E071	-47327
chr17	261981	262046	E071	-47188
chr17	261323	261907	E072	-47327
chr17	261981	262046	E072	-47188
chr17	261323	261907	E073	-47327
chr17	261981	262046	E073	-47188
chr17	261323	261907	E074	-47327
chr17	261323	261907	E081	-47327
chr17	261981	262046	E081	-47188
chr17	272060	272344	E081	-36890
chr17	261981	262046	E082	-47188

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr17	259319	261194	E067	-48040
chr17	259319	261194	E068	-48040
chr17	259319	261194	E069	-48040
chr17	259319	261194	E070	-48040
chr17	259319	261194	E071	-48040
chr17	259319	261194	E072	-48040
chr17	259319	261194	E073	-48040
chr17	259319	261194	E074	-48040
chr17	259319	261194	E081	-48040
chr17	259319	261194	E082	-48040

rs16947824