Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 16 | NC_000016.10:g.54049255T>C |
GRCh37.p13 chr 16 | NC_000016.9:g.54083167T>C |
FTO RefSeqGene | NG_012969.1:g.350293T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
FTO transcript | NM_001080432.2:c. | N/A | Intron Variant |
FTO transcript variant X1 | XM_011523313.2:c. | N/A | Intron Variant |
FTO transcript variant X4 | XM_011523314.2:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X5 | XM_011523315.2:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X6 | XM_011523316.2:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X2 | XM_017023654.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X3 | XM_017023655.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X7 | XM_017023656.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X8 | XM_017023657.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X9 | XM_017023658.1:c. | N/A | Genic Downstream Transcript Variant |
FTO transcript variant X10 | XR_001751980.1:n. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.918 | C=0.082 |
1000Genomes | American | Sub | 694 | T=0.930 | C=0.070 |
1000Genomes | East Asian | Sub | 1008 | T=0.969 | C=0.031 |
1000Genomes | Europe | Sub | 1006 | T=0.893 | C=0.107 |
1000Genomes | Global | Study-wide | 5008 | T=0.887 | C=0.113 |
1000Genomes | South Asian | Sub | 978 | T=0.730 | C=0.270 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.902 | C=0.098 |
The Genome Aggregation Database | African | Sub | 8728 | T=0.912 | C=0.088 |
The Genome Aggregation Database | American | Sub | 838 | T=0.940 | C=0.060 |
The Genome Aggregation Database | East Asian | Sub | 1620 | T=0.981 | C=0.019 |
The Genome Aggregation Database | Europe | Sub | 18500 | T=0.925 | C=0.074 |
The Genome Aggregation Database | Global | Study-wide | 29988 | T=0.924 | C=0.075 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.860 | C=0.140 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.905 | C=0.095 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs16952906 | 0.000979 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr16 | 54041556 | 54041632 | E067 | -41535 |
chr16 | 54041678 | 54041732 | E067 | -41435 |
chr16 | 54041750 | 54041902 | E067 | -41265 |
chr16 | 54088009 | 54088210 | E067 | 4842 |
chr16 | 54088252 | 54088668 | E067 | 5085 |
chr16 | 54088798 | 54088960 | E067 | 5631 |
chr16 | 54096292 | 54096695 | E067 | 13125 |
chr16 | 54060154 | 54060211 | E068 | -22956 |
chr16 | 54060507 | 54060605 | E068 | -22562 |
chr16 | 54060937 | 54060991 | E068 | -22176 |
chr16 | 54061128 | 54061333 | E068 | -21834 |
chr16 | 54072293 | 54072376 | E068 | -10791 |
chr16 | 54072381 | 54072473 | E068 | -10694 |
chr16 | 54087814 | 54087913 | E068 | 4647 |
chr16 | 54088009 | 54088210 | E068 | 4842 |
chr16 | 54088252 | 54088668 | E068 | 5085 |
chr16 | 54088798 | 54088960 | E068 | 5631 |
chr16 | 54096718 | 54097712 | E068 | 13551 |
chr16 | 54127338 | 54127921 | E068 | 44171 |
chr16 | 54060507 | 54060605 | E069 | -22562 |
chr16 | 54060937 | 54060991 | E069 | -22176 |
chr16 | 54088009 | 54088210 | E069 | 4842 |
chr16 | 54088252 | 54088668 | E069 | 5085 |
chr16 | 54127182 | 54127281 | E069 | 44015 |
chr16 | 54083059 | 54084087 | E070 | 0 |
chr16 | 54087162 | 54087257 | E070 | 3995 |
chr16 | 54087366 | 54087765 | E070 | 4199 |
chr16 | 54087814 | 54087913 | E070 | 4647 |
chr16 | 54088009 | 54088210 | E070 | 4842 |
chr16 | 54088252 | 54088668 | E070 | 5085 |
chr16 | 54088798 | 54088960 | E070 | 5631 |
chr16 | 54041556 | 54041632 | E071 | -41535 |
chr16 | 54041678 | 54041732 | E071 | -41435 |
chr16 | 54041750 | 54041902 | E071 | -41265 |
chr16 | 54060507 | 54060605 | E071 | -22562 |
chr16 | 54060937 | 54060991 | E071 | -22176 |
chr16 | 54061128 | 54061333 | E071 | -21834 |
chr16 | 54061360 | 54061470 | E071 | -21697 |
chr16 | 54061491 | 54061678 | E071 | -21489 |
chr16 | 54083059 | 54084087 | E071 | 0 |
chr16 | 54088252 | 54088668 | E071 | 5085 |
chr16 | 54088798 | 54088960 | E071 | 5631 |
chr16 | 54089042 | 54089406 | E071 | 5875 |
chr16 | 54089853 | 54090053 | E071 | 6686 |
chr16 | 54090199 | 54090243 | E071 | 7032 |
chr16 | 54090244 | 54090324 | E071 | 7077 |
chr16 | 54093188 | 54093553 | E071 | 10021 |
chr16 | 54096718 | 54097712 | E071 | 13551 |
chr16 | 54097755 | 54097830 | E071 | 14588 |
chr16 | 54088252 | 54088668 | E072 | 5085 |
chr16 | 54088798 | 54088960 | E072 | 5631 |
chr16 | 54096718 | 54097712 | E072 | 13551 |
chr16 | 54126813 | 54126853 | E072 | 43646 |
chr16 | 54127182 | 54127281 | E072 | 44015 |
chr16 | 54127338 | 54127921 | E072 | 44171 |
chr16 | 54127994 | 54128056 | E072 | 44827 |
chr16 | 54033632 | 54033714 | E074 | -49453 |
chr16 | 54041556 | 54041632 | E074 | -41535 |
chr16 | 54041678 | 54041732 | E074 | -41435 |
chr16 | 54041750 | 54041902 | E074 | -41265 |
chr16 | 54061360 | 54061470 | E074 | -21697 |
chr16 | 54061491 | 54061678 | E074 | -21489 |
chr16 | 54083059 | 54084087 | E074 | 0 |
chr16 | 54088009 | 54088210 | E074 | 4842 |
chr16 | 54088252 | 54088668 | E074 | 5085 |
chr16 | 54088798 | 54088960 | E074 | 5631 |
chr16 | 54089042 | 54089406 | E074 | 5875 |
chr16 | 54096718 | 54097712 | E074 | 13551 |
chr16 | 54097755 | 54097830 | E074 | 14588 |
chr16 | 54104563 | 54104994 | E074 | 21396 |
chr16 | 54126813 | 54126853 | E074 | 43646 |
chr16 | 54127182 | 54127281 | E074 | 44015 |
chr16 | 54127338 | 54127921 | E074 | 44171 |
chr16 | 54127994 | 54128056 | E074 | 44827 |
chr16 | 54088009 | 54088210 | E081 | 4842 |
chr16 | 54060507 | 54060605 | E082 | -22562 |
chr16 | 54063794 | 54063844 | E082 | -19323 |
chr16 | 54087814 | 54087913 | E082 | 4647 |
chr16 | 54088798 | 54088960 | E082 | 5631 |
chr16 | 54106222 | 54106519 | E082 | 23055 |
chr16 | 54106567 | 54106687 | E082 | 23400 |