rs16972726

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0021 (653/29966,GnomAD)
C=0033 (964/29118,TOPMED)
C=0019 (94/5008,1000G)
chr15:81075468 (GRCh38.p7) (15q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
130 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.81075468T>C
GRCh37.p13 chr 15NC_000015.9:g.81367809T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.930C=0.070
1000GenomesAmericanSub694T=1.000C=0.000
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=1.000C=0.000
1000GenomesGlobalStudy-wide5008T=0.981C=0.019
1000GenomesSouth AsianSub978T=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8718T=0.926C=0.074
The Genome Aggregation DatabaseAmericanSub838T=1.000C=0.000
The Genome Aggregation DatabaseEast AsianSub1620T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18488T=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29966T=0.978C=0.021
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.966C=0.033
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169727260.000349alcohol dependence21314694

eQTL of rs16972726 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16972726 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr158134036381340544E067-27265
chr158134063781340691E067-27118
chr158134097381341023E067-26786
chr158134102581341119E067-26690
chr158134134881341414E067-26395
chr158134294581342999E067-24810
chr158134302281343160E067-24649
chr158138435181385271E06716542
chr158139399581394071E06726186
chr158139417581394358E06726366
chr158139438481394489E06726575
chr158139887981399158E06731070
chr158139917881399390E06731369
chr158139939281399477E06731583
chr158134023381340297E068-27512
chr158134036381340544E068-27265
chr158134063781340691E068-27118
chr158134097381341023E068-26786
chr158134102581341119E068-26690
chr158134134881341414E068-26395
chr158138435181385271E06816542
chr158139417581394358E06826366
chr158139438481394489E06826575
chr158139472081394854E06826911
chr158132242481322983E069-44826
chr158134023381340297E069-27512
chr158134036381340544E069-27265
chr158134063781340691E069-27118
chr158134097381341023E069-26786
chr158134102581341119E069-26690
chr158134134881341414E069-26395
chr158134176181341811E069-25998
chr158134188881341938E069-25871
chr158134208381342844E069-24965
chr158134294581342999E069-24810
chr158134302281343160E069-24649
chr158138435181385271E06916542
chr158139399581394071E06926186
chr158139417581394358E06926366
chr158139438481394489E06926575
chr158131815981318843E070-48966
chr158131886881318957E070-48852
chr158131901781319077E070-48732
chr158133989781339947E070-27862
chr158134013581340185E070-27624
chr158134023381340297E070-27512
chr158134036381340544E070-27265
chr158134063781340691E070-27118
chr158134097381341023E070-26786
chr158134102581341119E070-26690
chr158134134881341414E070-26395
chr158134176181341811E070-25998
chr158134188881341938E070-25871
chr158134208381342844E070-24965
chr158139438481394489E07026575
chr158139472081394854E07026911
chr158132176881321999E071-45810
chr158132205481322217E071-45592
chr158132242481322983E071-44826
chr158134023381340297E071-27512
chr158134036381340544E071-27265
chr158134063781340691E071-27118
chr158134097381341023E071-26786
chr158134102581341119E071-26690
chr158134134881341414E071-26395
chr158134176181341811E071-25998
chr158134188881341938E071-25871
chr158134208381342844E071-24965
chr158134294581342999E071-24810
chr158134302281343160E071-24649
chr158134321281343446E071-24363
chr158138435181385271E07116542
chr158139417581394358E07126366
chr158139438481394489E07126575
chr158139472081394854E07126911
chr158132176881321999E072-45810
chr158132205481322217E072-45592
chr158134023381340297E072-27512
chr158134036381340544E072-27265
chr158134063781340691E072-27118
chr158134097381341023E072-26786
chr158134102581341119E072-26690
chr158134134881341414E072-26395
chr158134302281343160E072-24649
chr158139399581394071E07226186
chr158139417581394358E07226366
chr158139438481394489E07226575
chr158139472081394854E07226911
chr158138435181385271E07316542
chr158139417581394358E07326366
chr158139438481394489E07326575
chr158139472081394854E07326911
chr158134013581340185E074-27624
chr158134023381340297E074-27512
chr158134036381340544E074-27265
chr158134063781340691E074-27118
chr158134097381341023E074-26786
chr158134102581341119E074-26690
chr158134134881341414E074-26395
chr158134176181341811E074-25998
chr158134188881341938E074-25871
chr158134208381342844E074-24965
chr158134294581342999E074-24810
chr158134302281343160E074-24649
chr158134321281343446E074-24363
chr158139417581394358E07426366
chr158139438481394489E07426575
chr158139472081394854E07426911
chr158133635781336551E081-31258
chr158134208381342844E081-24965
chr158134294581342999E081-24810
chr158134302281343160E081-24649
chr158134321281343446E081-24363
chr158134661481346923E081-20886
chr158137278081372830E0814971
chr158137331581373663E0815506
chr158137377981373884E0815970
chr158137391881373968E0816109
chr158139358781393651E08125778
chr158139399581394071E08126186
chr158139417581394358E08126366
chr158139438481394489E08126575
chr158133616981336219E082-31590
chr158133635781336551E082-31258
chr158133657381336788E082-31021
chr158133683181337023E082-30786
chr158134302281343160E082-24649
chr158134321281343446E082-24363
chr158139417581394358E08226366
chr158139438481394489E08226575