SNP Detail Info-rs16973062

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.33600096T>C
GRCh37.p13 chr 15	NC_000015.9:g.33892297T>C

Molecule type	Change	Amino acid[Codon]	SO Term
RYR3 transcript variant 1	NM_001036.4:c.	N/A	Intron Variant
RYR3 transcript variant 2	NM_001243996.2:c.	N/A	Intron Variant
RYR3 transcript variant X9	XM_011521880.2:c.	N/A	Intron Variant
RYR3 transcript variant X1	XM_017022468.1:c.	N/A	Intron Variant
RYR3 transcript variant X2	XM_017022469.1:c.	N/A	Intron Variant
RYR3 transcript variant X3	XM_017022470.1:c.	N/A	Intron Variant
RYR3 transcript variant X4	XM_017022471.1:c.	N/A	Intron Variant
RYR3 transcript variant X5	XM_017022472.1:c.	N/A	Intron Variant
RYR3 transcript variant X7	XM_017022473.1:c.	N/A	Intron Variant
RYR3 transcript variant X8	XM_017022474.1:c.	N/A	Intron Variant
RYR3 transcript variant X10	XM_017022475.1:c.	N/A	Intron Variant
RYR3 transcript variant X11	XM_017022476.1:c.	N/A	Intron Variant
RYR3 transcript variant X13	XM_017022477.1:c.	N/A	Intron Variant
RYR3 transcript variant X12	XR_001751369.1:n.	N/A	Intron Variant
RYR3 transcript variant X14	XR_001751370.1:n.	N/A	Intron Variant
RYR3 transcript variant X14	XR_001751371.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.813	C=0.187
1000Genomes	American	Sub	694	T=0.900	C=0.100
1000Genomes	East Asian	Sub	1008	T=0.414	C=0.586
1000Genomes	Europe	Sub	1006	T=0.951	C=0.049
1000Genomes	Global	Study-wide	5008	T=0.773	C=0.227
1000Genomes	South Asian	Sub	978	T=0.820	C=0.180
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.961	C=0.039
The Genome Aggregation Database	African	Sub	8722	T=0.815	C=0.185
The Genome Aggregation Database	American	Sub	838	T=0.880	C=0.120
The Genome Aggregation Database	East Asian	Sub	1622	T=0.434	C=0.566
The Genome Aggregation Database	Europe	Sub	18500	T=0.943	C=0.056
The Genome Aggregation Database	Global	Study-wide	29984	T=0.877	C=0.123
The Genome Aggregation Database	Other	Sub	302	T=0.960	C=0.040
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.871	C=0.128
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.962	C=0.038

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs16973062	0.000462	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	33872448	33872691	E067	-19606
chr15	33872696	33873206	E067	-19091
chr15	33873244	33873789	E067	-18508
chr15	33843244	33843331	E068	-48966
chr15	33844021	33844061	E068	-48236
chr15	33844206	33844598	E068	-47699
chr15	33844679	33844729	E068	-47568
chr15	33844829	33845087	E068	-47210
chr15	33845579	33845662	E068	-46635
chr15	33851247	33851441	E068	-40856
chr15	33851500	33851716	E068	-40581
chr15	33872696	33873206	E068	-19091
chr15	33844021	33844061	E070	-48236
chr15	33844206	33844598	E070	-47699
chr15	33844679	33844729	E070	-47568
chr15	33844829	33845087	E070	-47210
chr15	33845579	33845662	E070	-46635
chr15	33931797	33931889	E070	39500
chr15	33932904	33932954	E070	40607
chr15	33933296	33933465	E070	40999
chr15	33931797	33931889	E081	39500

rs16973062