SNP Detail Info-rs16986005

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0013 (402/29526,GnomAD)
A=0020 (598/29118,TOPMED)
A=0010 (48/5008,1000G)

Position: chr20:41712483 (GRCh38.p7) (20q12)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 14 Enhancers around

Promoter: 10 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 20	NC_000020.11:g.41712483G>A
GRCh37.p13 chr 20	NC_000020.10:g.40341122G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.964	A=0.036
1000Genomes	American	Sub	694	G=1.000	A=0.000
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=1.000	A=0.000
1000Genomes	Global	Study-wide	5008	G=0.990	A=0.010
1000Genomes	South Asian	Sub	978	G=1.000	A=0.000
The Genome Aggregation Database	African	Sub	8644	G=0.954	A=0.046
The Genome Aggregation Database	American	Sub	838	G=1.000	A=0.000
The Genome Aggregation Database	East Asian	Sub	1620	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18124	G=0.999	A=0.000
The Genome Aggregation Database	Global	Study-wide	29526	G=0.986	A=0.013
The Genome Aggregation Database	Other	Sub	300	G=1.000	A=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.979	A=0.020

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs16986005	0.000106	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr20	40346146	40346220	E069	5024
chr20	40346308	40346454	E069	5186
chr20	40346571	40346737	E069	5449
chr20	40342527	40342644	E070	1405
chr20	40342774	40342849	E070	1652
chr20	40343031	40343081	E070	1909
chr20	40343155	40343230	E070	2033
chr20	40346146	40346220	E070	5024
chr20	40346308	40346454	E070	5186
chr20	40346571	40346737	E070	5449
chr20	40346957	40347010	E070	5835
chr20	40367269	40367849	E071	26147
chr20	40367882	40367960	E071	26760
chr20	40346957	40347010	E082	5835

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr20	40321090	40322781	E067	-18341
chr20	40321090	40322781	E068	-18341
chr20	40321090	40322781	E069	-18341
chr20	40321090	40322781	E070	-18341
chr20	40321090	40322781	E071	-18341
chr20	40321090	40322781	E072	-18341
chr20	40321090	40322781	E073	-18341
chr20	40321090	40322781	E074	-18341
chr20	40321090	40322781	E081	-18341
chr20	40321090	40322781	E082	-18341

rs16986005