SNP Detail Info-rs170099

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C==0156 (4697/29950,GnomAD)
C==0220 (6430/29118,TOPMED)
C==0186 (932/5008,1000G)
C==0025 (98/3854,ALSPAC)
C==0025 (91/3708,TWINSUK)

Position: chr7:119360158 (GRCh38.p7) (7q31.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.119360158C>T
GRCh37.p13 chr 7	NC_000007.13:g.119000212C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.521	T=0.479
1000Genomes	American	Sub	694	C=0.110	T=0.890
1000Genomes	East Asian	Sub	1008	C=0.099	T=0.901
1000Genomes	Europe	Sub	1006	C=0.027	T=0.973
1000Genomes	Global	Study-wide	5008	C=0.186	T=0.814
1000Genomes	South Asian	Sub	978	C=0.040	T=0.960
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.025	T=0.975
The Genome Aggregation Database	African	Sub	8706	C=0.462	T=0.538
The Genome Aggregation Database	American	Sub	836	C=0.100	T=0.900
The Genome Aggregation Database	East Asian	Sub	1616	C=0.091	T=0.909
The Genome Aggregation Database	Europe	Sub	18490	C=0.023	T=0.976
The Genome Aggregation Database	Global	Study-wide	29950	C=0.156	T=0.843
The Genome Aggregation Database	Other	Sub	302	C=0.040	T=0.960
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.220	T=0.779
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.025	T=0.975

PMID	Title	Author	Journal
22613542	ANKRD7 and CYTL1 are novel risk genes for alcohol drinking behavior.	Chen XD	Chin Med J (Engl)

SNP ID	p-value	Traits	Study
rs170099	7.16E-07	alcohol consumption	22613542

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs170099