rs170099

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0156 (4697/29950,GnomAD)
C==0220 (6430/29118,TOPMED)
C==0186 (932/5008,1000G)
C==0025 (98/3854,ALSPAC)
C==0025 (91/3708,TWINSUK)
chr7:119360158 (GRCh38.p7) (7q31.31)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.119360158C>T
GRCh37.p13 chr 7NC_000007.13:g.119000212C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.521T=0.479
1000GenomesAmericanSub694C=0.110T=0.890
1000GenomesEast AsianSub1008C=0.099T=0.901
1000GenomesEuropeSub1006C=0.027T=0.973
1000GenomesGlobalStudy-wide5008C=0.186T=0.814
1000GenomesSouth AsianSub978C=0.040T=0.960
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.025T=0.975
The Genome Aggregation DatabaseAfricanSub8706C=0.462T=0.538
The Genome Aggregation DatabaseAmericanSub836C=0.100T=0.900
The Genome Aggregation DatabaseEast AsianSub1616C=0.091T=0.909
The Genome Aggregation DatabaseEuropeSub18490C=0.023T=0.976
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.156T=0.843
The Genome Aggregation DatabaseOtherSub302C=0.040T=0.960
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.220T=0.779
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.025T=0.975
PMID Title Author Journal
22613542ANKRD7 and CYTL1 are novel risk genes for alcohol drinking behavior.Chen XDChin Med J (Engl)

P-Value

SNP ID p-value Traits Study
rs1700997.16E-07alcohol consumption22613542

eQTL of rs170099 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs170099 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7118970892118970942E074-29270