SNP Detail Info-rs17019771

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0188 (5629/29914,GnomAD)
G=0135 (3953/29118,TOPMED)
G=0183 (915/5008,1000G)
G=0218 (841/3854,ALSPAC)
G=0215 (799/3708,TWINSUK)

Position: chr3:82408979 (GRCh38.p7) (3p12.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.82408979A>G
GRCh37.p13 chr 3	NC_000003.11:g.82458130A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.967	G=0.033
1000Genomes	American	Sub	694	A=0.770	G=0.230
1000Genomes	East Asian	Sub	1008	A=0.665	G=0.335
1000Genomes	Europe	Sub	1006	A=0.799	G=0.201
1000Genomes	Global	Study-wide	5008	A=0.817	G=0.183
1000Genomes	South Asian	Sub	978	A=0.830	G=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.782	G=0.218
The Genome Aggregation Database	African	Sub	8724	A=0.943	G=0.057
The Genome Aggregation Database	American	Sub	830	A=0.760	G=0.240
The Genome Aggregation Database	East Asian	Sub	1586	A=0.661	G=0.339
The Genome Aggregation Database	Europe	Sub	18472	A=0.764	G=0.235
The Genome Aggregation Database	Global	Study-wide	29914	A=0.811	G=0.188
The Genome Aggregation Database	Other	Sub	302	A=0.810	G=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.864	G=0.135
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.785	G=0.215

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs17019771	7.08E-06	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17019771