SNP Detail Info-rs17027360

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0131 (3933/29926,GnomAD)
G=0135 (3934/29116,TOPMED)
G=0135 (675/5008,1000G)

Position: chr2:41259414 (GRCh38.p7) (2p22.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.41259414A>G
GRCh37.p13 chr 2	NC_000002.11:g.41486554A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.811	G=0.189
1000Genomes	American	Sub	694	A=0.910	G=0.090
1000Genomes	East Asian	Sub	1008	A=0.793	G=0.207
1000Genomes	Europe	Sub	1006	A=0.914	G=0.086
1000Genomes	Global	Study-wide	5008	A=0.865	G=0.135
1000Genomes	South Asian	Sub	978	A=0.930	G=0.070
The Genome Aggregation Database	African	Sub	8708	A=0.831	G=0.169
The Genome Aggregation Database	American	Sub	836	A=0.890	G=0.110
The Genome Aggregation Database	East Asian	Sub	1598	A=0.769	G=0.231
The Genome Aggregation Database	Europe	Sub	18482	A=0.893	G=0.106
The Genome Aggregation Database	Global	Study-wide	29926	A=0.868	G=0.131
The Genome Aggregation Database	Other	Sub	302	A=0.900	G=0.100
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.864	G=0.135

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17027360	0.00033	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17027360