rs17029209

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0075 (2249/29986,GnomAD)
C=0056 (1636/29118,TOPMED)
C=0027 (134/5008,1000G)
C=0106 (410/3854,ALSPAC)
C=0101 (376/3708,TWINSUK)
chr3:1739941 (GRCh38.p7) (3p26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.1739941T>C
GRCh37.p13 chr 3NC_000003.11:g.1781625T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.997C=0.003
1000GenomesAmericanSub694T=0.960C=0.040
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=0.915C=0.085
1000GenomesGlobalStudy-wide5008T=0.973C=0.027
1000GenomesSouth AsianSub978T=0.980C=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.894C=0.106
The Genome Aggregation DatabaseAfricanSub8728T=0.982C=0.018
The Genome Aggregation DatabaseAmericanSub838T=0.960C=0.040
The Genome Aggregation DatabaseEast AsianSub1622T=0.999C=0.001
The Genome Aggregation DatabaseEuropeSub18496T=0.889C=0.110
The Genome Aggregation DatabaseGlobalStudy-wide29986T=0.925C=0.075
The Genome Aggregation DatabaseOtherSub302T=0.950C=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.943C=0.056
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.899C=0.101
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs170292096.21E-05alcohol withdrawal symptoms22072270

eQTL of rs17029209 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17029209 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.