SNP Detail Info-rs17036851

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.1263731G>A
GRCh37.p13 chr 3	NC_000003.11:g.1305415G>A

Molecule type	Change	Amino acid[Codon]	SO Term
CNTN6 transcript variant 2	NM_001289080.1:c.	N/A	Intron Variant
CNTN6 transcript variant 3	NM_001289081.1:c.	N/A	Intron Variant
CNTN6 transcript variant 1	NM_014461.3:c.	N/A	Intron Variant
CNTN6 transcript variant X1	XM_005265058.3:c.	N/A	Intron Variant
CNTN6 transcript variant X2	XM_011533590.2:c.	N/A	Intron Variant
CNTN6 transcript variant X7	XM_011533591.2:c.	N/A	Intron Variant
CNTN6 transcript variant X1	XM_017006171.1:c.	N/A	Intron Variant
CNTN6 transcript variant X4	XM_017006172.1:c.	N/A	Intron Variant
CNTN6 transcript variant X5	XM_017006173.1:c.	N/A	Intron Variant
CNTN6 transcript variant X4	XM_017006174.1:c.	N/A	Intron Variant
CNTN6 transcript variant X8	XM_017006175.1:c.	N/A	Intron Variant
CNTN6 transcript variant X9	XM_017006176.1:c.	N/A	Intron Variant
CNTN6 transcript variant X10	XM_017006177.1:c.	N/A	Intron Variant
CNTN6 transcript variant X7	XR_940415.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.892	A=0.108
1000Genomes	American	Sub	694	G=0.980	A=0.020
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=0.999	A=0.001
1000Genomes	Global	Study-wide	5008	G=0.969	A=0.031
1000Genomes	South Asian	Sub	978	G=1.000	A=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.999	A=0.001
The Genome Aggregation Database	African	Sub	8706	G=0.919	A=0.081
The Genome Aggregation Database	American	Sub	838	G=0.990	A=0.010
The Genome Aggregation Database	East Asian	Sub	1608	G=0.999	A=0.001
The Genome Aggregation Database	Europe	Sub	18484	G=0.998	A=0.001
The Genome Aggregation Database	Global	Study-wide	29938	G=0.975	A=0.024
The Genome Aggregation Database	Other	Sub	302	G=0.990	A=0.010
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.961	A=0.038
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.999	A=0.001

PMID	Title	Author	Journal
17407593	Molecular genetics of nicotine dependence and abstinence: whole genome association using 520,000 SNPs.	Uhl GR	BMC Genet

SNP ID	p-value	Traits	Study
rs17036851	0.00059	nicotine dependence	17407593

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	1291045	1291333	E068	-14082
chr3	1291373	1291587	E068	-13828
chr3	1293522	1293664	E068	-11751
chr3	1293725	1294009	E068	-11406
chr3	1291045	1291333	E069	-14082
chr3	1291373	1291587	E069	-13828
chr3	1293356	1293452	E069	-11963
chr3	1293522	1293664	E069	-11751
chr3	1293725	1294009	E069	-11406
chr3	1274053	1274151	E070	-31264
chr3	1274267	1274359	E070	-31056
chr3	1291045	1291333	E070	-14082
chr3	1291373	1291587	E070	-13828
chr3	1291045	1291333	E071	-14082
chr3	1291373	1291587	E071	-13828
chr3	1293522	1293664	E071	-11751
chr3	1293356	1293452	E072	-11963
chr3	1293522	1293664	E072	-11751
chr3	1291045	1291333	E073	-14082
chr3	1291045	1291333	E074	-14082
chr3	1291373	1291587	E074	-13828
chr3	1293356	1293452	E074	-11963
chr3	1293522	1293664	E074	-11751
chr3	1293725	1294009	E074	-11406

rs17036851