| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.104548608C>T |
| GRCh37.p13 chr 12 | NC_000012.11:g.104942386C>T |
| CHST11 RefSeqGene | NG_029810.1:g.96695C>T |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| CHST11 transcript variant 2 | NM_001173982.1:c. | N/A | Intron Variant |
| CHST11 transcript variant 1 | NM_018413.5:c. | N/A | Intron Variant |
| CHST11 transcript variant X1 | XM_017019369.1:c. | N/A | Genic Upstream Transcript Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | C=0.986 | T=0.014 |
| 1000Genomes | American | Sub | 694 | C=0.910 | T=0.090 |
| 1000Genomes | East Asian | Sub | 1008 | C=0.550 | T=0.450 |
| 1000Genomes | Europe | Sub | 1006 | C=0.943 | T=0.057 |
| 1000Genomes | Global | Study-wide | 5008 | C=0.859 | T=0.141 |
| 1000Genomes | South Asian | Sub | 978 | C=0.880 | T=0.120 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.954 | T=0.046 |
| The Genome Aggregation Database | African | Sub | 8720 | C=0.978 | T=0.022 |
| The Genome Aggregation Database | American | Sub | 836 | C=0.880 | T=0.120 |
| The Genome Aggregation Database | East Asian | Sub | 1614 | C=0.504 | T=0.496 |
| The Genome Aggregation Database | Europe | Sub | 18504 | C=0.945 | T=0.054 |
| The Genome Aggregation Database | Global | Study-wide | 29976 | C=0.928 | T=0.071 |
| The Genome Aggregation Database | Other | Sub | 302 | C=0.850 | T=0.150 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.953 | T=0.046 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.960 | T=0.040 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs1704904 | 0.000837 | nicotine smoking | 19268276 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 104904031 | 104904421 | E067 | -37965 |
| chr12 | 104904473 | 104904575 | E067 | -37811 |
| chr12 | 104912778 | 104913952 | E067 | -28434 |
| chr12 | 104916823 | 104917796 | E067 | -24590 |
| chr12 | 104917853 | 104918187 | E067 | -24199 |
| chr12 | 104898893 | 104899090 | E068 | -43296 |
| chr12 | 104899095 | 104899180 | E068 | -43206 |
| chr12 | 104899183 | 104899571 | E068 | -42815 |
| chr12 | 104899619 | 104899681 | E068 | -42705 |
| chr12 | 104899729 | 104899789 | E068 | -42597 |
| chr12 | 104903764 | 104903832 | E068 | -38554 |
| chr12 | 104903920 | 104904022 | E068 | -38364 |
| chr12 | 104904031 | 104904421 | E068 | -37965 |
| chr12 | 104904473 | 104904575 | E068 | -37811 |
| chr12 | 104905155 | 104905307 | E068 | -37079 |
| chr12 | 104905315 | 104905365 | E068 | -37021 |
| chr12 | 104908625 | 104908694 | E068 | -33692 |
| chr12 | 104908768 | 104908831 | E068 | -33555 |
| chr12 | 104908899 | 104908949 | E068 | -33437 |
| chr12 | 104908954 | 104909214 | E068 | -33172 |
| chr12 | 104909307 | 104909387 | E068 | -32999 |
| chr12 | 104909467 | 104909532 | E068 | -32854 |
| chr12 | 104909629 | 104909764 | E068 | -32622 |
| chr12 | 104913979 | 104914812 | E068 | -27574 |
| chr12 | 104914818 | 104914991 | E068 | -27395 |
| chr12 | 104916823 | 104917796 | E068 | -24590 |
| chr12 | 104917853 | 104918187 | E068 | -24199 |
| chr12 | 104918484 | 104918609 | E068 | -23777 |
| chr12 | 104934205 | 104934285 | E068 | -8101 |
| chr12 | 104934420 | 104934537 | E068 | -7849 |
| chr12 | 104934630 | 104934716 | E068 | -7670 |
| chr12 | 104934726 | 104935104 | E068 | -7282 |
| chr12 | 104935140 | 104935216 | E068 | -7170 |
| chr12 | 104940285 | 104941527 | E068 | -859 |
| chr12 | 104945055 | 104945334 | E068 | 2669 |
| chr12 | 104951156 | 104951251 | E068 | 8770 |
| chr12 | 104951397 | 104951479 | E068 | 9011 |
| chr12 | 104951572 | 104951800 | E068 | 9186 |
| chr12 | 104959456 | 104959685 | E068 | 17070 |
| chr12 | 104959760 | 104959955 | E068 | 17374 |
| chr12 | 104960092 | 104960275 | E068 | 17706 |
| chr12 | 104960365 | 104960521 | E068 | 17979 |
| chr12 | 104960529 | 104960681 | E068 | 18143 |
| chr12 | 104961212 | 104961313 | E068 | 18826 |
| chr12 | 104961341 | 104961490 | E068 | 18955 |
| chr12 | 104961678 | 104961739 | E068 | 19292 |
| chr12 | 104961868 | 104962596 | E068 | 19482 |
| chr12 | 104969539 | 104969909 | E068 | 27153 |
| chr12 | 104970068 | 104970122 | E068 | 27682 |
| chr12 | 104970258 | 104970367 | E068 | 27872 |
| chr12 | 104970645 | 104971035 | E068 | 28259 |
| chr12 | 104971080 | 104971298 | E068 | 28694 |
| chr12 | 104973631 | 104973742 | E068 | 31245 |
| chr12 | 104989666 | 104991406 | E068 | 47280 |
| chr12 | 104991574 | 104991680 | E068 | 49188 |
| chr12 | 104991753 | 104992106 | E068 | 49367 |
| chr12 | 104992161 | 104992220 | E068 | 49775 |
| chr12 | 104897091 | 104897189 | E069 | -45197 |
| chr12 | 104913979 | 104914812 | E069 | -27574 |
| chr12 | 104914818 | 104914991 | E069 | -27395 |
| chr12 | 104915091 | 104915151 | E069 | -27235 |
| chr12 | 104915236 | 104915446 | E069 | -26940 |
| chr12 | 104915493 | 104915769 | E069 | -26617 |
| chr12 | 104918484 | 104918609 | E069 | -23777 |
| chr12 | 104949291 | 104949408 | E069 | 6905 |
| chr12 | 104949412 | 104949677 | E069 | 7026 |
| chr12 | 104949760 | 104949828 | E069 | 7374 |
| chr12 | 104961678 | 104961739 | E069 | 19292 |
| chr12 | 104898695 | 104898892 | E070 | -43494 |
| chr12 | 104898893 | 104899090 | E070 | -43296 |
| chr12 | 104899095 | 104899180 | E070 | -43206 |
| chr12 | 104899183 | 104899571 | E070 | -42815 |
| chr12 | 104900076 | 104900161 | E070 | -42225 |
| chr12 | 104901346 | 104901717 | E070 | -40669 |
| chr12 | 104903764 | 104903832 | E070 | -38554 |
| chr12 | 104903920 | 104904022 | E070 | -38364 |
| chr12 | 104904031 | 104904421 | E070 | -37965 |
| chr12 | 104907394 | 104907865 | E070 | -34521 |
| chr12 | 104907925 | 104908091 | E070 | -34295 |
| chr12 | 104908148 | 104908245 | E070 | -34141 |
| chr12 | 104911472 | 104911646 | E070 | -30740 |
| chr12 | 104911662 | 104911712 | E070 | -30674 |
| chr12 | 104911718 | 104911774 | E070 | -30612 |
| chr12 | 104912099 | 104912232 | E070 | -30154 |
| chr12 | 104912284 | 104912381 | E070 | -30005 |
| chr12 | 104912441 | 104912694 | E070 | -29692 |
| chr12 | 104912778 | 104913952 | E070 | -28434 |
| chr12 | 104913979 | 104914812 | E070 | -27574 |
| chr12 | 104914818 | 104914991 | E070 | -27395 |
| chr12 | 104915091 | 104915151 | E070 | -27235 |
| chr12 | 104915236 | 104915446 | E070 | -26940 |
| chr12 | 104915493 | 104915769 | E070 | -26617 |
| chr12 | 104927567 | 104927651 | E070 | -14735 |
| chr12 | 104927809 | 104927903 | E070 | -14483 |
| chr12 | 104927997 | 104928560 | E070 | -13826 |
| chr12 | 104928665 | 104928733 | E070 | -13653 |
| chr12 | 104928771 | 104928877 | E070 | -13509 |
| chr12 | 104928950 | 104929054 | E070 | -13332 |
| chr12 | 104929203 | 104929432 | E070 | -12954 |
| chr12 | 104934630 | 104934716 | E070 | -7670 |
| chr12 | 104934726 | 104935104 | E070 | -7282 |
| chr12 | 104935140 | 104935216 | E070 | -7170 |
| chr12 | 104938704 | 104938868 | E070 | -3518 |
| chr12 | 104939002 | 104939083 | E070 | -3303 |
| chr12 | 104944871 | 104944921 | E070 | 2485 |
| chr12 | 104944960 | 104945000 | E070 | 2574 |
| chr12 | 104945055 | 104945334 | E070 | 2669 |
| chr12 | 104945400 | 104945590 | E070 | 3014 |
| chr12 | 104945627 | 104945726 | E070 | 3241 |
| chr12 | 104949291 | 104949408 | E070 | 6905 |
| chr12 | 104949412 | 104949677 | E070 | 7026 |
| chr12 | 104949760 | 104949828 | E070 | 7374 |
| chr12 | 104961868 | 104962596 | E070 | 19482 |
| chr12 | 104978626 | 104978808 | E070 | 36240 |
| chr12 | 104978873 | 104978936 | E070 | 36487 |
| chr12 | 104978997 | 104979092 | E070 | 36611 |
| chr12 | 104979135 | 104979248 | E070 | 36749 |
| chr12 | 104980639 | 104980741 | E070 | 38253 |
| chr12 | 104899095 | 104899180 | E071 | -43206 |
| chr12 | 104901192 | 104901242 | E071 | -41144 |
| chr12 | 104903764 | 104903832 | E071 | -38554 |
| chr12 | 104903920 | 104904022 | E071 | -38364 |
| chr12 | 104904031 | 104904421 | E071 | -37965 |
| chr12 | 104904473 | 104904575 | E071 | -37811 |
| chr12 | 104912778 | 104913952 | E071 | -28434 |
| chr12 | 104916823 | 104917796 | E071 | -24590 |
| chr12 | 104918828 | 104919091 | E071 | -23295 |
| chr12 | 104939798 | 104939897 | E071 | -2489 |
| chr12 | 104940285 | 104941527 | E071 | -859 |
| chr12 | 104961678 | 104961739 | E071 | 19292 |
| chr12 | 104961868 | 104962596 | E071 | 19482 |
| chr12 | 104903764 | 104903832 | E072 | -38554 |
| chr12 | 104903920 | 104904022 | E072 | -38364 |
| chr12 | 104904031 | 104904421 | E072 | -37965 |
| chr12 | 104913979 | 104914812 | E072 | -27574 |
| chr12 | 104959456 | 104959685 | E072 | 17070 |
| chr12 | 104959760 | 104959955 | E072 | 17374 |
| chr12 | 104989407 | 104989462 | E072 | 47021 |
| chr12 | 104900424 | 104901172 | E073 | -41214 |
| chr12 | 104903920 | 104904022 | E073 | -38364 |
| chr12 | 104904031 | 104904421 | E073 | -37965 |
| chr12 | 104912778 | 104913952 | E073 | -28434 |
| chr12 | 104913979 | 104914812 | E073 | -27574 |
| chr12 | 104989407 | 104989462 | E073 | 47021 |
| chr12 | 104989666 | 104991406 | E073 | 47280 |
| chr12 | 104900424 | 104901172 | E074 | -41214 |
| chr12 | 104903920 | 104904022 | E074 | -38364 |
| chr12 | 104904031 | 104904421 | E074 | -37965 |
| chr12 | 104904473 | 104904575 | E074 | -37811 |
| chr12 | 104912778 | 104913952 | E074 | -28434 |
| chr12 | 104915091 | 104915151 | E074 | -27235 |
| chr12 | 104915236 | 104915446 | E074 | -26940 |
| chr12 | 104915493 | 104915769 | E074 | -26617 |
| chr12 | 104917853 | 104918187 | E074 | -24199 |
| chr12 | 104918484 | 104918609 | E074 | -23777 |
| chr12 | 104940285 | 104941527 | E074 | -859 |
| chr12 | 104959456 | 104959685 | E074 | 17070 |
| chr12 | 104959760 | 104959955 | E074 | 17374 |
| chr12 | 104960092 | 104960275 | E074 | 17706 |
| chr12 | 104960365 | 104960521 | E074 | 17979 |
| chr12 | 104964737 | 104964877 | E074 | 22351 |
| chr12 | 104965117 | 104965167 | E074 | 22731 |
| chr12 | 104965212 | 104965576 | E074 | 22826 |
| chr12 | 104899095 | 104899180 | E081 | -43206 |
| chr12 | 104900424 | 104901172 | E081 | -41214 |
| chr12 | 104901192 | 104901242 | E081 | -41144 |
| chr12 | 104901346 | 104901717 | E081 | -40669 |
| chr12 | 104901724 | 104901827 | E081 | -40559 |
| chr12 | 104901831 | 104901888 | E081 | -40498 |
| chr12 | 104916823 | 104917796 | E081 | -24590 |
| chr12 | 104917853 | 104918187 | E081 | -24199 |
| chr12 | 104918484 | 104918609 | E081 | -23777 |
| chr12 | 104927997 | 104928560 | E081 | -13826 |
| chr12 | 104928665 | 104928733 | E081 | -13653 |
| chr12 | 104928771 | 104928877 | E081 | -13509 |
| chr12 | 104928950 | 104929054 | E081 | -13332 |
| chr12 | 104929203 | 104929432 | E081 | -12954 |
| chr12 | 104945400 | 104945590 | E081 | 3014 |
| chr12 | 104945627 | 104945726 | E081 | 3241 |
| chr12 | 104949291 | 104949408 | E081 | 6905 |
| chr12 | 104949412 | 104949677 | E081 | 7026 |
| chr12 | 104949760 | 104949828 | E081 | 7374 |
| chr12 | 104961678 | 104961739 | E081 | 19292 |
| chr12 | 104961868 | 104962596 | E081 | 19482 |
| chr12 | 104971080 | 104971298 | E081 | 28694 |
| chr12 | 104971313 | 104971856 | E081 | 28927 |
| chr12 | 104971872 | 104972163 | E081 | 29486 |
| chr12 | 104989666 | 104991406 | E081 | 47280 |
| chr12 | 104991574 | 104991680 | E081 | 49188 |
| chr12 | 104899619 | 104899681 | E082 | -42705 |
| chr12 | 104899729 | 104899789 | E082 | -42597 |
| chr12 | 104900076 | 104900161 | E082 | -42225 |
| chr12 | 104900424 | 104901172 | E082 | -41214 |
| chr12 | 104901192 | 104901242 | E082 | -41144 |
| chr12 | 104901346 | 104901717 | E082 | -40669 |
| chr12 | 104901724 | 104901827 | E082 | -40559 |
| chr12 | 104903920 | 104904022 | E082 | -38364 |
| chr12 | 104904031 | 104904421 | E082 | -37965 |
| chr12 | 104904473 | 104904575 | E082 | -37811 |
| chr12 | 104907394 | 104907865 | E082 | -34521 |
| chr12 | 104907925 | 104908091 | E082 | -34295 |
| chr12 | 104912778 | 104913952 | E082 | -28434 |
| chr12 | 104915493 | 104915769 | E082 | -26617 |
| chr12 | 104916071 | 104916121 | E082 | -26265 |
| chr12 | 104916823 | 104917796 | E082 | -24590 |
| chr12 | 104917853 | 104918187 | E082 | -24199 |
| chr12 | 104940285 | 104941527 | E082 | -859 |
| chr12 | 104961868 | 104962596 | E082 | 19482 |
| chr12 | 104978873 | 104978936 | E082 | 36487 |
| chr12 | 104980016 | 104980523 | E082 | 37630 |
| chr12 | 104980639 | 104980741 | E082 | 38253 |
| chr12 | 104989666 | 104991406 | E082 | 47280 |