Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.156467487A>G |
GRCh37.p13 chr 5 | NC_000005.9:g.155894497A>G |
SGCD RefSeqGene | LRG_205 |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SGCD transcript variant 1 | NM_000337.5:c. | N/A | Intron Variant |
SGCD transcript variant 3 | NM_001128209.1:c. | N/A | Intron Variant |
SGCD transcript variant 2 | NM_172244.2:c. | N/A | Intron Variant |
SGCD transcript variant X3 | XM_005265966.4:c. | N/A | Intron Variant |
SGCD transcript variant X5 | XM_005265967.2:c. | N/A | Intron Variant |
SGCD transcript variant X4 | XM_011534621.2:c. | N/A | Intron Variant |
SGCD transcript variant X1 | XM_017009723.1:c. | N/A | Intron Variant |
SGCD transcript variant X2 | XM_017009724.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.992 | G=0.008 |
1000Genomes | American | Sub | 694 | A=0.930 | G=0.070 |
1000Genomes | East Asian | Sub | 1008 | A=0.973 | G=0.027 |
1000Genomes | Europe | Sub | 1006 | A=0.952 | G=0.048 |
1000Genomes | Global | Study-wide | 5008 | A=0.957 | G=0.043 |
1000Genomes | South Asian | Sub | 978 | A=0.920 | G=0.080 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.968 | G=0.032 |
The Genome Aggregation Database | African | Sub | 8734 | A=0.989 | G=0.011 |
The Genome Aggregation Database | American | Sub | 838 | A=0.940 | G=0.060 |
The Genome Aggregation Database | East Asian | Sub | 1606 | A=0.974 | G=0.026 |
The Genome Aggregation Database | Europe | Sub | 18490 | A=0.953 | G=0.046 |
The Genome Aggregation Database | Global | Study-wide | 29968 | A=0.964 | G=0.035 |
The Genome Aggregation Database | Other | Sub | 300 | A=0.970 | G=0.030 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.970 | G=0.029 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.961 | G=0.039 |
PMID | Title | Author | Journal |
---|---|---|---|
19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs17053572 | 0.000507 | nicotine smoking | 19268276 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 155861324 | 155862359 | E067 | -32138 |
chr5 | 155887030 | 155887133 | E067 | -7364 |
chr5 | 155887173 | 155887299 | E067 | -7198 |
chr5 | 155901067 | 155901210 | E067 | 6570 |
chr5 | 155901274 | 155901710 | E067 | 6777 |
chr5 | 155901781 | 155901886 | E067 | 7284 |
chr5 | 155902055 | 155902109 | E067 | 7558 |
chr5 | 155902330 | 155902438 | E067 | 7833 |
chr5 | 155902530 | 155903241 | E067 | 8033 |
chr5 | 155903248 | 155903402 | E067 | 8751 |
chr5 | 155903627 | 155903841 | E067 | 9130 |
chr5 | 155903866 | 155904512 | E067 | 9369 |
chr5 | 155904537 | 155904630 | E067 | 10040 |
chr5 | 155924051 | 155924155 | E067 | 29554 |
chr5 | 155924235 | 155924320 | E067 | 29738 |
chr5 | 155924364 | 155924576 | E067 | 29867 |
chr5 | 155924758 | 155925235 | E067 | 30261 |
chr5 | 155900633 | 155900958 | E068 | 6136 |
chr5 | 155901781 | 155901886 | E068 | 7284 |
chr5 | 155902055 | 155902109 | E068 | 7558 |
chr5 | 155902330 | 155902438 | E068 | 7833 |
chr5 | 155902530 | 155903241 | E068 | 8033 |
chr5 | 155903248 | 155903402 | E068 | 8751 |
chr5 | 155903627 | 155903841 | E068 | 9130 |
chr5 | 155903866 | 155904512 | E068 | 9369 |
chr5 | 155904537 | 155904630 | E068 | 10040 |
chr5 | 155906619 | 155907263 | E068 | 12122 |
chr5 | 155924051 | 155924155 | E068 | 29554 |
chr5 | 155924235 | 155924320 | E068 | 29738 |
chr5 | 155924364 | 155924576 | E068 | 29867 |
chr5 | 155924758 | 155925235 | E068 | 30261 |
chr5 | 155925317 | 155925441 | E068 | 30820 |
chr5 | 155925484 | 155925576 | E068 | 30987 |
chr5 | 155861324 | 155862359 | E069 | -32138 |
chr5 | 155870414 | 155870494 | E069 | -24003 |
chr5 | 155873230 | 155873344 | E069 | -21153 |
chr5 | 155896654 | 155897123 | E069 | 2157 |
chr5 | 155900122 | 155900618 | E069 | 5625 |
chr5 | 155900633 | 155900958 | E069 | 6136 |
chr5 | 155901067 | 155901210 | E069 | 6570 |
chr5 | 155901274 | 155901710 | E069 | 6777 |
chr5 | 155901781 | 155901886 | E069 | 7284 |
chr5 | 155902055 | 155902109 | E069 | 7558 |
chr5 | 155902330 | 155902438 | E069 | 7833 |
chr5 | 155902530 | 155903241 | E069 | 8033 |
chr5 | 155903248 | 155903402 | E069 | 8751 |
chr5 | 155903627 | 155903841 | E069 | 9130 |
chr5 | 155903866 | 155904512 | E069 | 9369 |
chr5 | 155904537 | 155904630 | E069 | 10040 |
chr5 | 155923173 | 155924030 | E069 | 28676 |
chr5 | 155861324 | 155862359 | E070 | -32138 |
chr5 | 155864411 | 155864763 | E070 | -29734 |
chr5 | 155865207 | 155865406 | E070 | -29091 |
chr5 | 155900122 | 155900618 | E070 | 5625 |
chr5 | 155900633 | 155900958 | E070 | 6136 |
chr5 | 155901067 | 155901210 | E070 | 6570 |
chr5 | 155901781 | 155901886 | E070 | 7284 |
chr5 | 155902055 | 155902109 | E070 | 7558 |
chr5 | 155902330 | 155902438 | E070 | 7833 |
chr5 | 155902530 | 155903241 | E070 | 8033 |
chr5 | 155903248 | 155903402 | E070 | 8751 |
chr5 | 155903627 | 155903841 | E070 | 9130 |
chr5 | 155903866 | 155904512 | E070 | 9369 |
chr5 | 155905350 | 155905430 | E070 | 10853 |
chr5 | 155924758 | 155925235 | E070 | 30261 |
chr5 | 155896654 | 155897123 | E071 | 2157 |
chr5 | 155900122 | 155900618 | E071 | 5625 |
chr5 | 155900633 | 155900958 | E071 | 6136 |
chr5 | 155902055 | 155902109 | E071 | 7558 |
chr5 | 155902330 | 155902438 | E071 | 7833 |
chr5 | 155902530 | 155903241 | E071 | 8033 |
chr5 | 155903248 | 155903402 | E071 | 8751 |
chr5 | 155903627 | 155903841 | E071 | 9130 |
chr5 | 155903866 | 155904512 | E071 | 9369 |
chr5 | 155904537 | 155904630 | E071 | 10040 |
chr5 | 155904796 | 155904892 | E071 | 10299 |
chr5 | 155923173 | 155924030 | E071 | 28676 |
chr5 | 155924051 | 155924155 | E071 | 29554 |
chr5 | 155924235 | 155924320 | E071 | 29738 |
chr5 | 155924364 | 155924576 | E071 | 29867 |
chr5 | 155925317 | 155925441 | E071 | 30820 |
chr5 | 155925484 | 155925576 | E071 | 30987 |
chr5 | 155925665 | 155925873 | E071 | 31168 |
chr5 | 155925895 | 155926085 | E071 | 31398 |
chr5 | 155861324 | 155862359 | E072 | -32138 |
chr5 | 155870414 | 155870494 | E072 | -24003 |
chr5 | 155896654 | 155897123 | E072 | 2157 |
chr5 | 155900122 | 155900618 | E072 | 5625 |
chr5 | 155900633 | 155900958 | E072 | 6136 |
chr5 | 155902055 | 155902109 | E072 | 7558 |
chr5 | 155902330 | 155902438 | E072 | 7833 |
chr5 | 155902530 | 155903241 | E072 | 8033 |
chr5 | 155903248 | 155903402 | E072 | 8751 |
chr5 | 155903627 | 155903841 | E072 | 9130 |
chr5 | 155903866 | 155904512 | E072 | 9369 |
chr5 | 155904537 | 155904630 | E072 | 10040 |
chr5 | 155905350 | 155905430 | E072 | 10853 |
chr5 | 155923173 | 155924030 | E072 | 28676 |
chr5 | 155924051 | 155924155 | E072 | 29554 |
chr5 | 155924235 | 155924320 | E072 | 29738 |
chr5 | 155924364 | 155924576 | E072 | 29867 |
chr5 | 155925317 | 155925441 | E072 | 30820 |
chr5 | 155925484 | 155925576 | E072 | 30987 |
chr5 | 155925665 | 155925873 | E072 | 31168 |
chr5 | 155925895 | 155926085 | E072 | 31398 |
chr5 | 155870414 | 155870494 | E073 | -24003 |
chr5 | 155900633 | 155900958 | E073 | 6136 |
chr5 | 155901067 | 155901210 | E073 | 6570 |
chr5 | 155901781 | 155901886 | E073 | 7284 |
chr5 | 155902055 | 155902109 | E073 | 7558 |
chr5 | 155902330 | 155902438 | E073 | 7833 |
chr5 | 155902530 | 155903241 | E073 | 8033 |
chr5 | 155903248 | 155903402 | E073 | 8751 |
chr5 | 155903627 | 155903841 | E073 | 9130 |
chr5 | 155923173 | 155924030 | E073 | 28676 |
chr5 | 155896654 | 155897123 | E074 | 2157 |
chr5 | 155900633 | 155900958 | E074 | 6136 |
chr5 | 155901067 | 155901210 | E074 | 6570 |
chr5 | 155901274 | 155901710 | E074 | 6777 |
chr5 | 155901781 | 155901886 | E074 | 7284 |
chr5 | 155902055 | 155902109 | E074 | 7558 |
chr5 | 155902330 | 155902438 | E074 | 7833 |
chr5 | 155902530 | 155903241 | E074 | 8033 |
chr5 | 155903248 | 155903402 | E074 | 8751 |
chr5 | 155903627 | 155903841 | E074 | 9130 |
chr5 | 155903866 | 155904512 | E074 | 9369 |
chr5 | 155904537 | 155904630 | E074 | 10040 |
chr5 | 155904796 | 155904892 | E074 | 10299 |
chr5 | 155905350 | 155905430 | E074 | 10853 |
chr5 | 155909995 | 155910154 | E074 | 15498 |
chr5 | 155910267 | 155910430 | E074 | 15770 |
chr5 | 155923173 | 155924030 | E074 | 28676 |
chr5 | 155924051 | 155924155 | E074 | 29554 |
chr5 | 155924235 | 155924320 | E074 | 29738 |
chr5 | 155924364 | 155924576 | E074 | 29867 |
chr5 | 155925317 | 155925441 | E074 | 30820 |
chr5 | 155925484 | 155925576 | E074 | 30987 |
chr5 | 155925665 | 155925873 | E074 | 31168 |
chr5 | 155925895 | 155926085 | E074 | 31398 |
chr5 | 155846788 | 155846892 | E081 | -47605 |
chr5 | 155900122 | 155900618 | E081 | 5625 |
chr5 | 155900633 | 155900958 | E081 | 6136 |
chr5 | 155901067 | 155901210 | E081 | 6570 |
chr5 | 155901274 | 155901710 | E081 | 6777 |
chr5 | 155901781 | 155901886 | E081 | 7284 |
chr5 | 155902055 | 155902109 | E081 | 7558 |
chr5 | 155902330 | 155902438 | E081 | 7833 |
chr5 | 155902530 | 155903241 | E081 | 8033 |
chr5 | 155903248 | 155903402 | E081 | 8751 |
chr5 | 155903627 | 155903841 | E081 | 9130 |
chr5 | 155924758 | 155925235 | E081 | 30261 |
chr5 | 155925317 | 155925441 | E081 | 30820 |
chr5 | 155925484 | 155925576 | E081 | 30987 |
chr5 | 155925665 | 155925873 | E081 | 31168 |
chr5 | 155925895 | 155926085 | E081 | 31398 |
chr5 | 155900633 | 155900958 | E082 | 6136 |
chr5 | 155901067 | 155901210 | E082 | 6570 |
chr5 | 155901274 | 155901710 | E082 | 6777 |
chr5 | 155901781 | 155901886 | E082 | 7284 |
chr5 | 155902055 | 155902109 | E082 | 7558 |
chr5 | 155902330 | 155902438 | E082 | 7833 |
chr5 | 155902530 | 155903241 | E082 | 8033 |