SNP Detail Info-rs17053982

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0092 (2771/29944,GnomAD)
A=0100 (2924/29118,TOPMED)
A=0105 (525/5008,1000G)
A=0061 (234/3854,ALSPAC)
A=0066 (245/3708,TWINSUK)

Position: chr5:156861811 (GRCh38.p7) (5q33.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.156861811G>A
GRCh37.p13 chr 5	NC_000005.9:g.156288822G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.885	A=0.115
1000Genomes	American	Sub	694	G=0.920	A=0.080
1000Genomes	East Asian	Sub	1008	G=0.893	A=0.107
1000Genomes	Europe	Sub	1006	G=0.933	A=0.067
1000Genomes	Global	Study-wide	5008	G=0.895	A=0.105
1000Genomes	South Asian	Sub	978	G=0.850	A=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.939	A=0.061
The Genome Aggregation Database	African	Sub	8710	G=0.880	A=0.120
The Genome Aggregation Database	American	Sub	836	G=0.920	A=0.080
The Genome Aggregation Database	East Asian	Sub	1618	G=0.894	A=0.106
The Genome Aggregation Database	Europe	Sub	18478	G=0.920	A=0.079
The Genome Aggregation Database	Global	Study-wide	29944	G=0.907	A=0.092
The Genome Aggregation Database	Other	Sub	302	G=0.930	A=0.070
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.899	A=0.100
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.934	A=0.066

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17053982	0.000733	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17053982