rs17081960

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0043 (1296/29870,GnomAD)
T=0058 (1710/29118,TOPMED)
T=0046 (230/5008,1000G)
T=0001 (2/3854,ALSPAC)
T=0000 (1/3708,TWINSUK)
chr6:120163633 (GRCh38.p7) (6q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.120163633C>T
GRCh37.p13 chr 6NC_000006.11:g.120484779C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.864T=0.136
1000GenomesAmericanSub694C=0.990T=0.010
1000GenomesEast AsianSub1008C=0.957T=0.043
1000GenomesEuropeSub1006C=0.999T=0.001
1000GenomesGlobalStudy-wide5008C=0.954T=0.046
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.999T=0.001
The Genome Aggregation DatabaseAfricanSub8714C=0.863T=0.137
The Genome Aggregation DatabaseAmericanSub834C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1558C=0.950T=0.050
The Genome Aggregation DatabaseEuropeSub18464C=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29870C=0.956T=0.043
The Genome Aggregation DatabaseOtherSub300C=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.941T=0.058
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=1.000T=0.000
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs170819600.0000425alcoholismpha002891
rs170819600.0000425alcohol dependence20201924

eQTL of rs17081960 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17081960 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.