rs17084794

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0172 (5174/29972,GnomAD)
A=0192 (5599/29118,TOPMED)
A=0181 (906/5008,1000G)
A=0109 (421/3854,ALSPAC)
A=0099 (368/3708,TWINSUK)
chr4:54753866 (GRCh38.p7) (4q12)
AD
GWASdb2
1   publication(s)
See rs on genome
81 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.54753866C>A
GRCh37.p13 chr 4NC_000004.11:g.55620032C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.684A=0.316
1000GenomesAmericanSub694C=0.910A=0.090
1000GenomesEast AsianSub1008C=0.893A=0.107
1000GenomesEuropeSub1006C=0.891A=0.109
1000GenomesGlobalStudy-wide5008C=0.819A=0.181
1000GenomesSouth AsianSub978C=0.790A=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.891A=0.109
The Genome Aggregation DatabaseAfricanSub8716C=0.703A=0.297
The Genome Aggregation DatabaseAmericanSub836C=0.890A=0.110
The Genome Aggregation DatabaseEast AsianSub1620C=0.906A=0.094
The Genome Aggregation DatabaseEuropeSub18498C=0.874A=0.125
The Genome Aggregation DatabaseGlobalStudy-wide29972C=0.827A=0.172
The Genome Aggregation DatabaseOtherSub302C=0.950A=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.807A=0.192
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.901A=0.099
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs170847940.00014alcohol dependence21314694

eQTL of rs17084794 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17084794 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr45558359955583692E067-36340
chr45558394655584174E067-35858
chr45564768355648410E06727651
chr45564848555648662E06728453
chr45565104955651177E06731017
chr45558359955583692E068-36340
chr45560716055607617E068-12415
chr45564619255646534E06826160
chr45564674355646946E06826711
chr45564744655647662E06827414
chr45564848555648662E06828453
chr45564971155649819E06829679
chr45564985355650103E06829821
chr45565014855651006E06830116
chr45565104955651177E06831017
chr45558359955583692E069-36340
chr45558394655584174E069-35858
chr45560716055607617E069-12415
chr45560866755608723E069-11309
chr45560920755609488E069-10544
chr45564619255646534E06926160
chr45564744655647662E06927414
chr45564848555648662E06928453
chr45564922255649300E06929190
chr45564971155649819E06929679
chr45564985355650103E06929821
chr45565014855651006E06930116
chr45565104955651177E06931017
chr45558359955583692E071-36340
chr45558394655584174E071-35858
chr45560716055607617E071-12415
chr45560866755608723E071-11309
chr45563562055635664E07115588
chr45564532855646074E07125296
chr45564619255646534E07126160
chr45564674355646946E07126711
chr45564744655647662E07127414
chr45564768355648410E07127651
chr45564848555648662E07128453
chr45564922255649300E07129190
chr45564971155649819E07129679
chr45564985355650103E07129821
chr45565014855651006E07130116
chr45565104955651177E07131017
chr45565147555651645E07131443
chr45558359955583692E072-36340
chr45558394655584174E072-35858
chr45560716055607617E072-12415
chr45564674355646946E07226711
chr45564848555648662E07228453
chr45564922255649300E07229190
chr45564971155649819E07229679
chr45564985355650103E07229821
chr45565014855651006E07230116
chr45565104955651177E07231017
chr45558359955583692E073-36340
chr45558394655584174E073-35858
chr45560716055607617E073-12415
chr45564768355648410E07327651
chr45564848555648662E07328453
chr45564985355650103E07329821
chr45565014855651006E07330116
chr45558359955583692E074-36340
chr45558394655584174E074-35858
chr45560716055607617E074-12415
chr45560893855609052E074-10980
chr45564744655647662E07427414
chr45564768355648410E07427651
chr45564848555648662E07428453
chr45564922255649300E07429190
chr45564971155649819E07429679
chr45564985355650103E07429821
chr45565014855651006E07430116
chr45565104955651177E07431017
chr45558949155589543E081-30489
chr45558959155589832E081-30200
chr45559018955590276E081-29756
chr45559030555590379E081-29653
chr45564768355648410E08127651
chr45558959155589832E082-30200
chr45564744655647662E08227414