rs17087443

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0256 (7695/29956,GnomAD)
C=0293 (8548/29116,TOPMED)
C=0275 (1375/5008,1000G)
C=0215 (828/3854,ALSPAC)
C=0226 (839/3708,TWINSUK)
chr13:62597436 (GRCh38.p7) (13q21.31)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.62597436T>C
GRCh37.p13 chr 13NC_000013.10:g.63171569T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.592C=0.408
1000GenomesAmericanSub694T=0.830C=0.170
1000GenomesEast AsianSub1008T=0.743C=0.257
1000GenomesEuropeSub1006T=0.805C=0.195
1000GenomesGlobalStudy-wide5008T=0.725C=0.275
1000GenomesSouth AsianSub978T=0.730C=0.270
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.785C=0.215
The Genome Aggregation DatabaseAfricanSub8716T=0.621C=0.379
The Genome Aggregation DatabaseAmericanSub838T=0.830C=0.170
The Genome Aggregation DatabaseEast AsianSub1620T=0.755C=0.245
The Genome Aggregation DatabaseEuropeSub18480T=0.794C=0.205
The Genome Aggregation DatabaseGlobalStudy-wide29956T=0.743C=0.256
The Genome Aggregation DatabaseOtherSub302T=0.820C=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.706C=0.293
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.774C=0.226
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs170874430.00058nicotine dependence17158188

eQTL of rs17087443 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17087443 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.