rs17088471

Homo sapiens
C>A
DACH1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
None (
chr13:71768304 (GRCh38.p7) (13q21.33)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.71768304C>A
GRCh37.p13 chr 13NC_000013.10:g.72342436C>A
DACH1 RefSeqGeneNG_011849.3:g.103889G>T

Gene: DACH1, dachshund family transcription factor 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
DACH1 transcript variant 3NM_004392.6:c.N/AIntron Variant
DACH1 transcript variant 1NM_080759.5:c.N/AIntron Variant
DACH1 transcript variant 2NM_080760.5:c.N/AIntron Variant
DACH1 transcript variant X1XM_011534939.2:c.N/AIntron Variant
DACH1 transcript variant X2XM_011534940.2:c.N/AIntron Variant
DACH1 transcript variant X4XM_011534941.2:c.N/AIntron Variant
DACH1 transcript variant X5XM_011534942.2:c.N/AGenic Upstream Transcript Variant
DACH1 transcript variant X3XM_017020396.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs170884710.000263alcohol dependence21314694

eQTL of rs17088471 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17088471 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr137233280672334781E068-7655
chr137229538772295496E070-46940
chr137229556372295613E070-46823
chr137232382372323922E070-18514
chr137232400372324063E070-18373
chr137233280672334781E070-7655
chr137237279772373213E07030361
chr137237333472373516E07030898
chr137237364472373737E07031208
chr137230174072301862E081-40574
chr137233246372332693E081-9743
chr137237525072375325E08232814
chr137238970372389753E08247267