rs17113034

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0150 (4505/29950,GnomAD)
C=0152 (4425/29118,TOPMED)
C=0135 (675/5008,1000G)
C=0128 (492/3854,ALSPAC)
C=0134 (496/3708,TWINSUK)
chr14:42439810 (GRCh38.p7) (14q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.42439810T>C
GRCh37.p13 chr 14NC_000014.8:g.42909013T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.776C=0.224
1000GenomesAmericanSub694T=0.930C=0.070
1000GenomesEast AsianSub1008T=0.884C=0.116
1000GenomesEuropeSub1006T=0.876C=0.124
1000GenomesGlobalStudy-wide5008T=0.865C=0.135
1000GenomesSouth AsianSub978T=0.910C=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.872C=0.128
The Genome Aggregation DatabaseAfricanSub8716T=0.784C=0.216
The Genome Aggregation DatabaseAmericanSub838T=0.930C=0.070
The Genome Aggregation DatabaseEast AsianSub1616T=0.933C=0.067
The Genome Aggregation DatabaseEuropeSub18478T=0.868C=0.131
The Genome Aggregation DatabaseGlobalStudy-wide29950T=0.849C=0.150
The Genome Aggregation DatabaseOtherSub302T=0.910C=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.848C=0.152
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.866C=0.134
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs171130340.00068alcohol dependence20201924

eQTL of rs17113034 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17113034 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.