SNP Detail Info-rs17131133

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0116 (3487/29950,GnomAD)
G=0084 (2466/29118,TOPMED)
G=0093 (465/5008,1000G)
G=0095 (366/3854,ALSPAC)
G=0107 (395/3708,TWINSUK)

Position: chr1:90690374 (GRCh38.p7) (1p22.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 14 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.90690374A>G
GRCh37.p13 chr 1	NC_000001.10:g.91155931A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.936	G=0.064
1000Genomes	American	Sub	694	A=0.840	G=0.160
1000Genomes	East Asian	Sub	1008	A=0.943	G=0.057
1000Genomes	Europe	Sub	1006	A=0.887	G=0.113
1000Genomes	Global	Study-wide	5008	A=0.907	G=0.093
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.905	G=0.095
The Genome Aggregation Database	African	Sub	8722	A=0.931	G=0.069
The Genome Aggregation Database	American	Sub	836	A=0.820	G=0.180
The Genome Aggregation Database	East Asian	Sub	1620	A=0.956	G=0.044
The Genome Aggregation Database	Europe	Sub	18470	A=0.856	G=0.143
The Genome Aggregation Database	Global	Study-wide	29950	A=0.883	G=0.116
The Genome Aggregation Database	Other	Sub	302	A=0.940	G=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.915	G=0.084
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.893	G=0.107

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17131133	0.000051	alcoholism	pha002893
rs17131133	0.000051	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	91193850	91193940	E068	37919

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr1	91172033	91173502	E068	16102
chr1	91183020	91183215	E070	27089
chr1	91183231	91183269	E070	27300
chr1	91183292	91183954	E070	27361
chr1	91183020	91183215	E071	27089
chr1	91183231	91183269	E071	27300
chr1	91183292	91183954	E071	27361
chr1	91183020	91183215	E074	27089
chr1	91183231	91183269	E074	27300
chr1	91183292	91183954	E074	27361
chr1	91196119	91196583	E074	40188
chr1	91183020	91183215	E082	27089
chr1	91183231	91183269	E082	27300
chr1	91183292	91183954	E082	27361

rs17131133