rs17155611

Homo sapiens
C>T
FAM107B : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0070 (2096/29900,GnomAD)
T=0053 (1543/29118,TOPMED)
T=0058 (291/5008,1000G)
T=0057 (218/3854,ALSPAC)
T=0048 (178/3708,TWINSUK)
chr10:14625354 (GRCh38.p7) (10p13)
CD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.14625354C>T
GRCh37.p13 chr 10NC_000010.10:g.14667353C>T

Gene: FAM107B, family with sequence similarity 107 member B(minus strand)

Molecule type Change Amino acid[Codon] SO Term
FAM107B transcript variant 1NM_001282695.1:c.N/AIntron Variant
FAM107B transcript variant 2NM_031453.3:c.N/AIntron Variant
FAM107B transcript variant 3NM_001282696.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 4NM_001282697.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 5NM_001282698.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 6NM_001282699.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 7NM_001282700.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 8NM_001282701.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 9NM_001282702.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 10NM_001282703.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 11NM_001320735.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 12NM_001320736.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 13NM_001320737.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 14NM_001320738.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 15NM_001320739.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 16NM_001320740.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant 17NM_001320741.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X2XM_005252616.3:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X1XM_011519735.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X3XM_017016746.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X4XM_017016747.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X5XM_017016748.1:c.N/AGenic Upstream Transcript Variant
FAM107B transcript variant X3XM_017016749.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.930T=0.070
1000GenomesAmericanSub694C=0.970T=0.030
1000GenomesEast AsianSub1008C=0.955T=0.045
1000GenomesEuropeSub1006C=0.950T=0.050
1000GenomesGlobalStudy-wide5008C=0.942T=0.058
1000GenomesSouth AsianSub978C=0.910T=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.943T=0.057
The Genome Aggregation DatabaseAfricanSub8710C=0.943T=0.057
The Genome Aggregation DatabaseAmericanSub836C=0.970T=0.030
The Genome Aggregation DatabaseEast AsianSub1616C=0.944T=0.056
The Genome Aggregation DatabaseEuropeSub18436C=0.920T=0.079
The Genome Aggregation DatabaseGlobalStudy-wide29900C=0.929T=0.070
The Genome Aggregation DatabaseOtherSub302C=0.950T=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.947T=0.053
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.952T=0.048
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs171556118.81E-05cocaine dependence23958962

eQTL of rs17155611 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17155611 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr101461743014617484E067-49869
chr101461753514617606E067-49747
chr101461768714617832E067-49521
chr101461790114617981E067-49372
chr101461976514619820E067-47533
chr101462005614621308E067-46045
chr101462276814623492E067-43861
chr101462365314623744E067-43609
chr101462375014623790E067-43563
chr101462385114623976E067-43377
chr101462400414624346E067-43007
chr101462517714626549E067-40804
chr101462658214626714E067-40639
chr101462672814627018E067-40335
chr101462741714627564E067-39789
chr101462756814628189E067-39164
chr101462844114628770E067-38583
chr101462892414629240E067-38113
chr101462954814630938E067-36415
chr101463190114632000E067-35353
chr101463204814632114E067-35239
chr101463231814632398E067-34955
chr101463251614632590E067-34763
chr101463262014632788E067-34565
chr101463341814633469E067-33884
chr101463366814633797E067-33556
chr101463389414633944E067-33409
chr101463402014634496E067-32857
chr101463460914635044E067-32309
chr101464221314642273E067-25080
chr101464230814642397E067-24956
chr101464282714642896E067-24457
chr101465136514651420E067-15933
chr101465143514651639E067-15714
chr101465165414651723E067-15630
chr101465176714651845E067-15508
chr101465193314652006E067-15347
chr101465243414652488E067-14865
chr101465256914652734E067-14619
chr101465856214658612E067-8741
chr101465917614659281E067-8072
chr101465928814659705E067-7648
chr101466715914668251E0670
chr101468958114691635E06722228
chr101471245814713586E06745105
chr101461743014617484E068-49869
chr101461753514617606E068-49747
chr101461768714617832E068-49521
chr101461790114617981E068-49372
chr101461819614618250E068-49103
chr101461905414619200E068-48153
chr101461969014619744E068-47609
chr101461976514619820E068-47533
chr101462005614621308E068-46045
chr101462133614621419E068-45934
chr101462155614621752E068-45601
chr101462276814623492E068-43861
chr101462365314623744E068-43609
chr101462375014623790E068-43563
chr101462385114623976E068-43377
chr101462517714626549E068-40804
chr101462658214626714E068-40639
chr101462672814627018E068-40335
chr101462741714627564E068-39789
chr101462756814628189E068-39164
chr101462954814630938E068-36415
chr101463204814632114E068-35239
chr101463231814632398E068-34955
chr101463251614632590E068-34763
chr101463262014632788E068-34565
chr101463313814633353E068-34000
chr101463341814633469E068-33884
chr101463366814633797E068-33556
chr101463389414633944E068-33409
chr101463402014634496E068-32857
chr101464021314640263E068-27090
chr101464033814640571E068-26782
chr101464062514641248E068-26105
chr101464139914641519E068-25834
chr101464161714641718E068-25635
chr101464210714642196E068-25157
chr101464221314642273E068-25080
chr101464230814642397E068-24956
chr101464247814642528E068-24825
chr101464282714642896E068-24457
chr101464293914643009E068-24344
chr101464320914643298E068-24055
chr101465136514651420E068-15933
chr101465143514651639E068-15714
chr101465165414651723E068-15630
chr101465176714651845E068-15508
chr101465256914652734E068-14619
chr101465301614653070E068-14283
chr101465917614659281E068-8072
chr101465928814659705E068-7648
chr101466715914668251E0680
chr101469493614696446E06827583
chr101461743014617484E069-49869
chr101461753514617606E069-49747
chr101461768714617832E069-49521
chr101461790114617981E069-49372
chr101461905414619200E069-48153
chr101462005614621308E069-46045
chr101462133614621419E069-45934
chr101462155614621752E069-45601
chr101462194814622013E069-45340
chr101462276814623492E069-43861
chr101462365314623744E069-43609
chr101462375014623790E069-43563
chr101462385114623976E069-43377
chr101462658214626714E069-40639
chr101462672814627018E069-40335
chr101462741714627564E069-39789
chr101462756814628189E069-39164
chr101462844114628770E069-38583
chr101462892414629240E069-38113
chr101462954814630938E069-36415
chr101463341814633469E069-33884
chr101463366814633797E069-33556
chr101463389414633944E069-33409
chr101463402014634496E069-32857
chr101463787014637955E069-29398
chr101463805014638100E069-29253
chr101463812414638265E069-29088
chr101463831414638379E069-28974
chr101463865714638711E069-28642
chr101463877314638848E069-28505
chr101463891514639006E069-28347
chr101463933714639404E069-27949
chr101464033814640571E069-26782
chr101464062514641248E069-26105
chr101464139914641519E069-25834
chr101464161714641718E069-25635
chr101464210714642196E069-25157
chr101464293914643009E069-24344
chr101464320914643298E069-24055
chr101465025014651037E069-16316
chr101465136514651420E069-15933
chr101465143514651639E069-15714
chr101465165414651723E069-15630
chr101465176714651845E069-15508
chr101465394014654712E069-12641
chr101466031514660369E069-6984
chr101466715914668251E0690
chr101468958114691635E06922228
chr101464293914643009E070-24344
chr101464320914643298E070-24055
chr101464331014643450E070-23903
chr101464347514643601E070-23752
chr101464364014643855E070-23498
chr101470729114707639E07039938
chr101470764014707787E07040287
chr101470802414708110E07040671
chr101470815714708207E07040804
chr101470831014708350E07040957
chr101470858714708638E07041234
chr101461743014617484E071-49869
chr101461753514617606E071-49747
chr101461768714617832E071-49521
chr101461790114617981E071-49372
chr101461819614618250E071-49103
chr101461878814618887E071-48466
chr101461905414619200E071-48153
chr101461969014619744E071-47609
chr101461976514619820E071-47533
chr101462005614621308E071-46045
chr101462133614621419E071-45934
chr101462155614621752E071-45601
chr101462194814622013E071-45340
chr101462232614622762E071-44591
chr101462365314623744E071-43609
chr101462375014623790E071-43563
chr101462385114623976E071-43377
chr101462400414624346E071-43007
chr101462658214626714E071-40639
chr101462672814627018E071-40335
chr101462741714627564E071-39789
chr101462756814628189E071-39164
chr101462844114628770E071-38583
chr101462892414629240E071-38113
chr101462954814630938E071-36415
chr101463100614631212E071-36141
chr101463148714631553E071-35800
chr101463159714631714E071-35639
chr101463190114632000E071-35353
chr101463204814632114E071-35239
chr101463231814632398E071-34955
chr101463251614632590E071-34763
chr101463262014632788E071-34565
chr101463313814633353E071-34000
chr101463341814633469E071-33884
chr101463366814633797E071-33556
chr101463389414633944E071-33409
chr101463402014634496E071-32857
chr101463460914635044E071-32309
chr101463662214636767E071-30586
chr101463683314636957E071-30396
chr101463697014637099E071-30254
chr101463726314637369E071-29984
chr101463760914637659E071-29694
chr101463770514637771E071-29582
chr101463787014637955E071-29398
chr101463805014638100E071-29253
chr101463812414638265E071-29088
chr101463831414638379E071-28974
chr101463865714638711E071-28642
chr101463877314638848E071-28505
chr101464021314640263E071-27090
chr101464033814640571E071-26782
chr101464062514641248E071-26105
chr101464139914641519E071-25834
chr101464161714641718E071-25635
chr101464210714642196E071-25157
chr101464221314642273E071-25080
chr101464230814642397E071-24956
chr101464247814642528E071-24825
chr101464282714642896E071-24457
chr101464293914643009E071-24344
chr101465136514651420E071-15933
chr101465143514651639E071-15714
chr101465165414651723E071-15630
chr101465176714651845E071-15508
chr101465193314652006E071-15347
chr101465243414652488E071-14865
chr101465256914652734E071-14619
chr101465856214658612E071-8741
chr101465862514658697E071-8656
chr101465877514658825E071-8528
chr101465917614659281E071-8072
chr101465928814659705E071-7648
chr101465977714659926E071-7427
chr101471365714713719E07146304
chr101471377314713844E07146420
chr101461743014617484E072-49869
chr101461753514617606E072-49747
chr101461768714617832E072-49521
chr101461790114617981E072-49372
chr101461819614618250E072-49103
chr101461878814618887E072-48466
chr101461905414619200E072-48153
chr101461969014619744E072-47609
chr101461976514619820E072-47533
chr101462133614621419E072-45934
chr101462155614621752E072-45601
chr101462276814623492E072-43861
chr101462365314623744E072-43609
chr101462375014623790E072-43563
chr101462385114623976E072-43377
chr101462400414624346E072-43007
chr101462658214626714E072-40639
chr101462672814627018E072-40335
chr101462741714627564E072-39789
chr101462756814628189E072-39164
chr101462844114628770E072-38583
chr101462892414629240E072-38113
chr101462954814630938E072-36415
chr101463366814633797E072-33556
chr101463389414633944E072-33409
chr101463402014634496E072-32857
chr101463460914635044E072-32309
chr101463662214636767E072-30586
chr101463683314636957E072-30396
chr101463697014637099E072-30254
chr101463787014637955E072-29398
chr101463805014638100E072-29253
chr101463812414638265E072-29088
chr101463831414638379E072-28974
chr101464033814640571E072-26782
chr101464062514641248E072-26105
chr101464139914641519E072-25834
chr101464161714641718E072-25635
chr101464210714642196E072-25157
chr101464221314642273E072-25080
chr101464230814642397E072-24956
chr101464247814642528E072-24825
chr101464282714642896E072-24457
chr101464293914643009E072-24344
chr101464320914643298E072-24055
chr101464331014643450E072-23903
chr101465394014654712E072-12641
chr101466715914668251E0720
chr101468958114691635E07222228
chr101471245814713586E07245105
chr101471365714713719E07246304
chr101471377314713844E07246420
chr101462741714627564E073-39789
chr101462756814628189E073-39164
chr101462954814630938E073-36415
chr101463831414638379E073-28974
chr101464139914641519E073-25834
chr101464347514643601E073-23752
chr101464364014643855E073-23498
chr101469493614696446E07327583
chr101461743014617484E074-49869
chr101461753514617606E074-49747
chr101461768714617832E074-49521
chr101461790114617981E074-49372
chr101461819614618250E074-49103
chr101461878814618887E074-48466
chr101461905414619200E074-48153
chr101461969014619744E074-47609
chr101461976514619820E074-47533
chr101462005614621308E074-46045
chr101462133614621419E074-45934
chr101462155614621752E074-45601
chr101462194814622013E074-45340
chr101462232614622762E074-44591
chr101462276814623492E074-43861
chr101462365314623744E074-43609
chr101462375014623790E074-43563
chr101462517714626549E074-40804
chr101462658214626714E074-40639
chr101462672814627018E074-40335
chr101462741714627564E074-39789
chr101462756814628189E074-39164
chr101462844114628770E074-38583
chr101462892414629240E074-38113
chr101462954814630938E074-36415
chr101463100614631212E074-36141
chr101463148714631553E074-35800
chr101463159714631714E074-35639
chr101463190114632000E074-35353
chr101463204814632114E074-35239
chr101463231814632398E074-34955
chr101463251614632590E074-34763
chr101463262014632788E074-34565
chr101463313814633353E074-34000
chr101463341814633469E074-33884
chr101463366814633797E074-33556
chr101463389414633944E074-33409
chr101463402014634496E074-32857
chr101463460914635044E074-32309
chr101463760914637659E074-29694
chr101463770514637771E074-29582
chr101463787014637955E074-29398
chr101463805014638100E074-29253
chr101463812414638265E074-29088
chr101463831414638379E074-28974
chr101463865714638711E074-28642
chr101464021314640263E074-27090
chr101464033814640571E074-26782
chr101464062514641248E074-26105
chr101464139914641519E074-25834
chr101464161714641718E074-25635
chr101464210714642196E074-25157
chr101464221314642273E074-25080
chr101464230814642397E074-24956
chr101464247814642528E074-24825
chr101465136514651420E074-15933
chr101465143514651639E074-15714
chr101465165414651723E074-15630
chr101465176714651845E074-15508
chr101465193314652006E074-15347
chr101465243414652488E074-14865
chr101465256914652734E074-14619
chr101465856214658612E074-8741
chr101465862514658697E074-8656
chr101465877514658825E074-8528
chr101465917614659281E074-8072
chr101465928814659705E074-7648
chr101468958114691635E07422228
chr101471245814713586E07445105
chr101462954814630938E081-36415
chr101463100614631212E081-36141
chr101463341814633469E081-33884
chr101463366814633797E081-33556
chr101463389414633944E081-33409
chr101464347514643601E081-23752
chr101464364014643855E081-23498
chr101466715914668251E0810
chr101468946914689509E08122116
chr101468958114691635E08122228
chr101471245814713586E08145105
chr101471365714713719E08146304
chr101471377314713844E08146420
chr101471397814714042E08146625
chr101471491514714955E08147562
chr101471506114715132E08147708
chr101471522914715823E08147876
chr101471589214715988E08148539
chr101471602414716074E08148671
chr101471610814716214E08148755
chr101471627214716791E08148919
chr101462276814623492E082-43861
chr101462954814630938E082-36415
chr101464320914643298E082-24055
chr101464331014643450E082-23903
chr101464347514643601E082-23752
chr101464364014643855E082-23498
chr101466715914668251E0820
chr101470729114707639E08239938
chr101470764014707787E08240287










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr101464472814644788E067-22565
chr101464489514645123E067-22230
chr101464514614648261E067-19092
chr101464472814644788E068-22565
chr101464489514645123E068-22230
chr101464514614648261E068-19092
chr101464472814644788E069-22565
chr101464489514645123E069-22230
chr101464514614648261E069-19092
chr101464472814644788E070-22565
chr101464489514645123E070-22230
chr101464514614648261E070-19092
chr101464472814644788E071-22565
chr101464489514645123E071-22230
chr101464514614648261E071-19092
chr101464472814644788E072-22565
chr101464489514645123E072-22230
chr101464514614648261E072-19092
chr101464472814644788E073-22565
chr101464489514645123E073-22230
chr101464514614648261E073-19092
chr101464472814644788E074-22565
chr101464489514645123E074-22230
chr101464514614648261E074-19092
chr101464514614648261E081-19092
chr101464472814644788E082-22565
chr101464489514645123E082-22230
chr101464514614648261E082-19092