rs17165697

Homo sapiens
G>A
ZNF804B : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0112 (3346/29774,GnomAD)
A=0113 (3291/29116,TOPMED)
A=0111 (556/5008,1000G)
A=0054 (210/3854,ALSPAC)
A=0056 (206/3708,TWINSUK)
chr7:88951002 (GRCh38.p7) (7q21.13)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.88951002G>A
GRCh37.p13 chr 7NC_000007.13:g.88580316G>A

Gene: ZNF804B, zinc finger protein 804B(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF804B transcriptNM_181646.3:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.837A=0.163
1000GenomesAmericanSub694G=0.940A=0.060
1000GenomesEast AsianSub1008G=0.785A=0.215
1000GenomesEuropeSub1006G=0.947A=0.053
1000GenomesGlobalStudy-wide5008G=0.889A=0.111
1000GenomesSouth AsianSub978G=0.970A=0.030
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.946A=0.054
The Genome Aggregation DatabaseAfricanSub8702G=0.844A=0.156
The Genome Aggregation DatabaseAmericanSub834G=0.940A=0.060
The Genome Aggregation DatabaseEast AsianSub1516G=0.793A=0.207
The Genome Aggregation DatabaseEuropeSub18422G=0.913A=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29774G=0.887A=0.112
The Genome Aggregation DatabaseOtherSub300G=0.910A=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.887A=0.113
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.944A=0.056
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs171656970.000806alcohol dependence20201924

eQTL of rs17165697 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17165697 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr78857207788572536E070-7780
chr78857258788572654E070-7662
chr78857287188572929E070-7387
chr78859408788594157E08113771
chr78859418088594230E08113864
chr78859441588595211E08114099
chr78855729988557604E082-22712
chr78855766188558034E082-22282
chr78855813088558359E082-21957