SNP Detail Info-rs17165697

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

ZNF804B : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0112 (3346/29774,GnomAD)
A=0113 (3291/29116,TOPMED)
A=0111 (556/5008,1000G)
A=0054 (210/3854,ALSPAC)
A=0056 (206/3708,TWINSUK)

Position: chr7:88951002 (GRCh38.p7) (7q21.13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 9 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.88951002G>A
GRCh37.p13 chr 7	NC_000007.13:g.88580316G>A

Molecule type	Change	Amino acid[Codon]	SO Term
ZNF804B transcript	NM_181646.3:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.837	A=0.163
1000Genomes	American	Sub	694	G=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	G=0.785	A=0.215
1000Genomes	Europe	Sub	1006	G=0.947	A=0.053
1000Genomes	Global	Study-wide	5008	G=0.889	A=0.111
1000Genomes	South Asian	Sub	978	G=0.970	A=0.030
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.946	A=0.054
The Genome Aggregation Database	African	Sub	8702	G=0.844	A=0.156
The Genome Aggregation Database	American	Sub	834	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	1516	G=0.793	A=0.207
The Genome Aggregation Database	Europe	Sub	18422	G=0.913	A=0.086
The Genome Aggregation Database	Global	Study-wide	29774	G=0.887	A=0.112
The Genome Aggregation Database	Other	Sub	300	G=0.910	A=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.887	A=0.113
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.944	A=0.056

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17165697	0.000806	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	88572077	88572536	E070	-7780
chr7	88572587	88572654	E070	-7662
chr7	88572871	88572929	E070	-7387
chr7	88594087	88594157	E081	13771
chr7	88594180	88594230	E081	13864
chr7	88594415	88595211	E081	14099
chr7	88557299	88557604	E082	-22712
chr7	88557661	88558034	E082	-22282
chr7	88558130	88558359	E082	-21957

rs17165697