| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 18 | NC_000018.10:g.24577590G>A |
| GRCh37.p13 chr 18 | NC_000018.9:g.22157554G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.988 | A=0.012 |
| 1000Genomes | American | Sub | 694 | G=0.880 | A=0.120 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.882 | A=0.118 |
| 1000Genomes | Europe | Sub | 1006 | G=0.763 | A=0.237 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.871 | A=0.129 |
| 1000Genomes | South Asian | Sub | 978 | G=0.800 | A=0.200 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.783 | A=0.217 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.869 | A=0.130 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.774 | A=0.226 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs17203601 | 0.000165 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr18 | 22175915 | 22176113 | E068 | 18361 |
| chr18 | 22139401 | 22139834 | E070 | -17720 |
| chr18 | 22139996 | 22140046 | E070 | -17508 |
| chr18 | 22175915 | 22176113 | E071 | 18361 |
| chr18 | 22120253 | 22120484 | E073 | -37070 |
| chr18 | 22120514 | 22120594 | E073 | -36960 |
| chr18 | 22120739 | 22120779 | E073 | -36775 |