SNP Detail Info-rs17219798

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0000 (2/28182,TOPMED)
A=0072 (1477/20504,GnomAD)
A=0056 (213/3775,1000G)
A=0092 (340/3708,TWINSUK)
A=0101 (292/2889,ALSPAC)

Position: chrX:5176299 (GRCh38.p7) (Xp22.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.948	A=0.052
1000Genomes	American	Sub	524	G=0.940	A=0.060
1000Genomes	East Asian	Sub	764	G=1.000	A=0.000
1000Genomes	Europe	Sub	766	G=0.890	A=0.110
1000Genomes	Global	Study-wide	3775	G=0.944	A=0.056
1000Genomes	South Asian	Sub	718	G=0.940	A=0.060
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.899	A=0.101
The Genome Aggregation Database	African	Sub	5779	G=0.940	A=0.060
The Genome Aggregation Database	American	Sub	603	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	996	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	12949	G=0.917	A=0.082
The Genome Aggregation Database	Global	Study-wide	20504	G=0.928	A=0.072
The Genome Aggregation Database	Other	Sub	177	G=0.860	A=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	28182	G=0.999	T=0.000
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.908	A=0.092

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17219798	0.00073	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17219798