rs1723034

Homo sapiens
C>T
SLC9A9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0285 (8532/29878,GnomAD)
C==0265 (7742/29118,TOPMED)
C==0349 (1746/5008,1000G)
C==0336 (1295/3854,ALSPAC)
C==0341 (1263/3708,TWINSUK)
chr3:143458406 (GRCh38.p7) (3q24)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.143458406C>T
GRCh37.p13 chr 3NC_000003.11:g.143177248C>T
SLC9A9 RefSeqGeneNG_017077.1:g.395126G>A

Gene: SLC9A9, solute carrier family 9 member A9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC9A9 transcriptNM_173653.3:c.N/AIntron Variant
SLC9A9 transcript variant X3XM_011512703.2:c.N/AIntron Variant
SLC9A9 transcript variant X1XM_017006202.1:c.N/AIntron Variant
SLC9A9 transcript variant X2XM_017006203.1:c.N/AIntron Variant
SLC9A9 transcript variant X4XM_011512704.2:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.147T=0.853
1000GenomesAmericanSub694C=0.390T=0.610
1000GenomesEast AsianSub1008C=0.500T=0.500
1000GenomesEuropeSub1006C=0.338T=0.662
1000GenomesGlobalStudy-wide5008C=0.349T=0.651
1000GenomesSouth AsianSub978C=0.450T=0.550
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.336T=0.664
The Genome Aggregation DatabaseAfricanSub8712C=0.161T=0.839
The Genome Aggregation DatabaseAmericanSub834C=0.440T=0.560
The Genome Aggregation DatabaseEast AsianSub1610C=0.506T=0.494
The Genome Aggregation DatabaseEuropeSub18424C=0.316T=0.683
The Genome Aggregation DatabaseGlobalStudy-wide29878C=0.285T=0.714
The Genome Aggregation DatabaseOtherSub298C=0.390T=0.610
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.265T=0.734
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.341T=0.659
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs17230340.000477alcohol dependence20201924

eQTL of rs1723034 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1723034 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3143137631143137729E067-39519
chr3143220226143220980E06742978
chr3143137631143137729E068-39519
chr3143137249143137299E069-39949
chr3143137631143137729E069-39519
chr3143138557143138680E069-38568
chr3143220226143220980E06942978
chr3143226677143226849E06949429
chr3143220226143220980E07042978
chr3143137249143137299E071-39949
chr3143137631143137729E071-39519
chr3143138557143138680E071-38568
chr3143163427143163568E071-13680
chr3143169923143169973E071-7275
chr3143220226143220980E07142978
chr3143221014143221175E07143766
chr3143226677143226849E07149429
chr3143137249143137299E072-39949
chr3143137631143137729E072-39519
chr3143138557143138680E072-38568
chr3143220226143220980E07242978
chr3143137249143137299E073-39949
chr3143137631143137729E073-39519
chr3143138557143138680E073-38568
chr3143137249143137299E074-39949
chr3143137631143137729E074-39519
chr3143138557143138680E074-38568
chr3143169923143169973E074-7275
chr3143220226143220980E07442978