rs17261061

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0277 (5721/20591,GnomAD)
A=0253 (954/3775,1000G)
A=0344 (1276/3708,TWINSUK)
A=0360 (1041/2889,ALSPAC)
chrX:119055458 (GRCh38.p7) (Xq24)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.119055458C>A
GRCh37.p13 chr XNC_000023.10:g.118189421C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003C=0.802A=0.198
1000GenomesAmericanSub524C=0.750A=0.250
1000GenomesEast AsianSub764C=0.930A=0.070
1000GenomesEuropeSub766C=0.650A=0.350
1000GenomesGlobalStudy-wide3775C=0.747A=0.253
1000GenomesSouth AsianSub718C=0.580A=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889C=0.640A=0.360
The Genome Aggregation DatabaseAfricanSub5798C=0.794A=0.206
The Genome Aggregation DatabaseAmericanSub614C=0.750A=0.250
The Genome Aggregation DatabaseEast AsianSub1014C=0.922A=0.078
The Genome Aggregation DatabaseEuropeSub12982C=0.674A=0.325
The Genome Aggregation DatabaseGlobalStudy-wide20591C=0.722A=0.277
The Genome Aggregation DatabaseOtherSub183C=0.630A=0.370
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.656A=0.344
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs172610610.00049alcohol dependence20201924

eQTL of rs17261061 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17261061 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX118190329118190394E072908
chrX118191075118191135E0721654
chrX118190329118190394E074908