SNP Detail Info-rs17288603

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.55921186G>A
GRCh37.p13 chr 3	NC_000003.11:g.55955214G>A

Molecule type	Change	Amino acid[Codon]	SO Term
ERC2 transcript variant 1	NM_015576.2:c.	N/A	Intron Variant
ERC2 transcript variant 2	NR_132749.1:n.	N/A	Intron Variant
ERC2 transcript variant X1	XM_017006138.1:c.	N/A	Intron Variant
ERC2 transcript variant X2	XM_017006139.1:c.	N/A	Intron Variant
ERC2 transcript variant X3	XM_017006140.1:c.	N/A	Intron Variant
ERC2 transcript variant X4	XM_017006141.1:c.	N/A	Intron Variant
ERC2 transcript variant X6	XM_017006142.1:c.	N/A	Intron Variant
ERC2 transcript variant X7	XM_017006143.1:c.	N/A	Intron Variant
ERC2 transcript variant X8	XM_017006144.1:c.	N/A	Intron Variant
ERC2 transcript variant X9	XM_017006145.1:c.	N/A	Intron Variant
ERC2 transcript variant X10	XM_017006146.1:c.	N/A	Intron Variant
ERC2 transcript variant X11	XM_017006147.1:c.	N/A	Intron Variant
ERC2 transcript variant X12	XM_017006148.1:c.	N/A	Intron Variant
ERC2 transcript variant X13	XM_017006149.1:c.	N/A	Intron Variant
ERC2 transcript variant X14	XM_017006150.1:c.	N/A	Intron Variant
ERC2 transcript variant X15	XM_017006151.1:c.	N/A	Intron Variant
ERC2 transcript variant X16	XM_017006152.1:c.	N/A	Intron Variant
ERC2 transcript variant X17	XM_017006153.1:c.	N/A	Intron Variant
ERC2 transcript variant X18	XM_017006154.1:c.	N/A	Intron Variant
ERC2 transcript variant X19	XM_017006155.1:c.	N/A	Intron Variant
ERC2 transcript variant X20	XM_017006156.1:c.	N/A	Intron Variant
ERC2 transcript variant X21	XM_017006157.1:c.	N/A	Intron Variant
ERC2 transcript variant X22	XM_017006158.1:c.	N/A	Intron Variant
ERC2 transcript variant X23	XM_017006159.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.836	A=0.164
1000Genomes	American	Sub	694	G=0.700	A=0.300
1000Genomes	East Asian	Sub	1008	G=0.759	A=0.241
1000Genomes	Europe	Sub	1006	G=0.614	A=0.386
1000Genomes	Global	Study-wide	5008	G=0.720	A=0.280
1000Genomes	South Asian	Sub	978	G=0.650	A=0.350
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.658	A=0.342
The Genome Aggregation Database	African	Sub	8712	G=0.820	A=0.180
The Genome Aggregation Database	American	Sub	836	G=0.730	A=0.270
The Genome Aggregation Database	East Asian	Sub	1584	G=0.772	A=0.228
The Genome Aggregation Database	Europe	Sub	18470	G=0.597	A=0.402
The Genome Aggregation Database	Global	Study-wide	29900	G=0.675	A=0.324
The Genome Aggregation Database	Other	Sub	298	G=0.630	A=0.370
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.722	A=0.277
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.659	A=0.341

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17288603	0.000782	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	55922479	55922547	E067	-32667
chr3	55922624	55922734	E067	-32480
chr3	55922479	55922547	E068	-32667
chr3	55922624	55922734	E068	-32480
chr3	55923631	55923681	E068	-31533
chr3	55922479	55922547	E069	-32667
chr3	55922624	55922734	E069	-32480
chr3	55930370	55930478	E070	-24736
chr3	55930982	55931056	E070	-24158
chr3	55931059	55931318	E070	-23896
chr3	55931509	55931646	E070	-23568
chr3	55931708	55931925	E070	-23289
chr3	55932119	55932213	E070	-23001
chr3	55941240	55941426	E070	-13788
chr3	55941707	55942178	E070	-13036
chr3	55922479	55922547	E071	-32667
chr3	55922624	55922734	E071	-32480
chr3	55923631	55923681	E071	-31533
chr3	55922479	55922547	E073	-32667
chr3	55922624	55922734	E073	-32480
chr3	55921955	55921995	E074	-33219
chr3	55922479	55922547	E074	-32667
chr3	55922624	55922734	E074	-32480
chr3	55909206	55909481	E081	-45733
chr3	55909776	55909853	E081	-45361

rs17288603