SNP Detail Info-rs17295389

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0080 (2397/29964,GnomAD)
A=0069 (2008/29118,TOPMED)
A=0049 (246/5008,1000G)
A=0125 (482/3854,ALSPAC)
A=0119 (441/3708,TWINSUK)

Position: chr13:81741664 (GRCh38.p7) (13q31.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.81741664G>A
GRCh37.p13 chr 13	NC_000013.10:g.82315799G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.979	A=0.021
1000Genomes	American	Sub	694	G=0.930	A=0.070
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=0.898	A=0.102
1000Genomes	Global	Study-wide	5008	G=0.951	A=0.049
1000Genomes	South Asian	Sub	978	G=0.930	A=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.875	A=0.125
The Genome Aggregation Database	African	Sub	8722	G=0.966	A=0.034
The Genome Aggregation Database	American	Sub	838	G=0.920	A=0.080
The Genome Aggregation Database	East Asian	Sub	1618	G=0.998	A=0.002
The Genome Aggregation Database	Europe	Sub	18484	G=0.891	A=0.108
The Genome Aggregation Database	Global	Study-wide	29964	G=0.920	A=0.080
The Genome Aggregation Database	Other	Sub	302	G=0.950	A=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.931	A=0.069
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.881	A=0.119

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs17295389	6.5E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr13	82354158	82354393	E081	38359
chr13	82354439	82354697	E081	38640
chr13	82354936	82354986	E081	39137
chr13	82355724	82355821	E081	39925

rs17295389