rs17332369

Homo sapiens
T>A
SERPINA7 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0073 (1520/20773,GnomAD)
A=0026 (99/3775,1000G)
A=0089 (331/3708,TWINSUK)
A=0094 (272/2889,ALSPAC)
chrX:106034774 (GRCh38.p7) (Xq22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.106034774T>A
GRCh37.p13 chr XNC_000023.10:g.105278765T>A
SERPINA7 RefSeqGeneNG_021252.1:g.8954A>T

Gene: SERPINA7, serpin family A member 7(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SERPINA7 transcriptNM_000354.5:c.N/AIntron Variant
SERPINA7 transcript variant X2XM_005262180.3:c.N/AIntron Variant
SERPINA7 transcript variant X1XM_006724683.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003T=0.996A=0.004
1000GenomesAmericanSub524T=0.970A=0.030
1000GenomesEast AsianSub764T=1.000A=0.000
1000GenomesEuropeSub766T=0.910A=0.090
1000GenomesGlobalStudy-wide3775T=0.974A=0.026
1000GenomesSouth AsianSub718T=0.990A=0.010
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889T=0.906A=0.094
The Genome Aggregation DatabaseAfricanSub5896T=0.991A=0.009
The Genome Aggregation DatabaseAmericanSub618T=0.970A=0.030
The Genome Aggregation DatabaseEast AsianSub990T=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub13085T=0.890A=0.109
The Genome Aggregation DatabaseGlobalStudy-wide20773T=0.926A=0.073
The Genome Aggregation DatabaseOtherSub184T=0.880A=0.120
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.911A=0.089
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs173323698.82E-05alcohol dependence21314694

eQTL of rs17332369 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17332369 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.