rs17337279

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0018 (555/29956,GnomAD)
T=0016 (487/29118,TOPMED)
T=0013 (65/5008,1000G)
T=0013 (51/3854,ALSPAC)
T=0017 (63/3708,TWINSUK)
chr11:121697408 (GRCh38.p7) (11q24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
246 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.121697408C>T
GRCh37.p13 chr 11NC_000011.9:g.121568116C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.965T=0.035
1000GenomesAmericanSub694C=0.990T=0.010
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.991T=0.009
1000GenomesGlobalStudy-wide5008C=0.987T=0.013
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.987T=0.013
The Genome Aggregation DatabaseAfricanSub8718C=0.977T=0.023
The Genome Aggregation DatabaseAmericanSub838C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1618C=0.999T=0.001
The Genome Aggregation DatabaseEuropeSub18480C=0.981T=0.018
The Genome Aggregation DatabaseGlobalStudy-wide29956C=0.981T=0.018
The Genome Aggregation DatabaseOtherSub302C=0.990T=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.983T=0.016
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.983T=0.017
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs173372790.000561alcohol dependence21314694

eQTL of rs17337279 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17337279 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr11121527928121528106E067-40010
chr11121528137121528373E067-39743
chr11121540198121540740E067-27376
chr11121540951121544288E067-23828
chr11121562918121563337E067-4779
chr11121565311121565385E067-2731
chr11121567760121567940E067-176
chr11121568019121568280E0670
chr11121568441121568627E067325
chr11121568682121568732E067566
chr11121570050121570144E0671934
chr11121570206121570256E0672090
chr11121570363121570752E0672247
chr11121570780121571186E0672664
chr11121571190121571380E0673074
chr11121611535121611630E06743419
chr11121611763121613570E06743647
chr11121523575121524306E068-43810
chr11121524696121524849E068-43267
chr11121524889121524975E068-43141
chr11121527928121528106E068-40010
chr11121528137121528373E068-39743
chr11121532578121533230E068-34886
chr11121540198121540740E068-27376
chr11121540951121544288E068-23828
chr11121562918121563337E068-4779
chr11121566700121566827E068-1289
chr11121567760121567940E068-176
chr11121568019121568280E0680
chr11121568441121568627E068325
chr11121568682121568732E068566
chr11121570050121570144E0681934
chr11121570206121570256E0682090
chr11121570363121570752E0682247
chr11121571672121571734E0683556
chr11121571764121571853E0683648
chr11121571860121571977E0683744
chr11121572365121572510E0684249
chr11121572549121572725E0684433
chr11121595057121595568E06826941
chr11121611055121611334E06842939
chr11121611535121611630E06843419
chr11121611763121613570E06843647
chr11121520356121520437E069-47679
chr11121520573121520729E069-47387
chr11121520797121520948E069-47168
chr11121527928121528106E069-40010
chr11121528137121528373E069-39743
chr11121540198121540740E069-27376
chr11121540951121544288E069-23828
chr11121562918121563337E069-4779
chr11121563967121564017E069-4099
chr11121566700121566827E069-1289
chr11121568019121568280E0690
chr11121568441121568627E069325
chr11121568682121568732E069566
chr11121569498121569548E0691382
chr11121569593121569643E0691477
chr11121570050121570144E0691934
chr11121570206121570256E0692090
chr11121570363121570752E0692247
chr11121570780121571186E0692664
chr11121571190121571380E0693074
chr11121571672121571734E0693556
chr11121571764121571853E0693648
chr11121571860121571977E0693744
chr11121572365121572510E0694249
chr11121572549121572725E0694433
chr11121611055121611334E06942939
chr11121611535121611630E06943419
chr11121611763121613570E06943647
chr11121521041121521555E070-46561
chr11121521653121521741E070-46375
chr11121521806121522351E070-45765
chr11121522515121522571E070-45545
chr11121522586121522636E070-45480
chr11121522740121522833E070-45283
chr11121522842121522882E070-45234
chr11121522955121523035E070-45081
chr11121523164121523214E070-44902
chr11121523251121523389E070-44727
chr11121523575121524306E070-43810
chr11121524696121524849E070-43267
chr11121524889121524975E070-43141
chr11121527928121528106E070-40010
chr11121528137121528373E070-39743
chr11121532578121533230E070-34886
chr11121533249121533346E070-34770
chr11121539847121540001E070-28115
chr11121540198121540740E070-27376
chr11121540951121544288E070-23828
chr11121544403121544443E070-23673
chr11121544596121544725E070-23391
chr11121544972121545022E070-23094
chr11121545334121545511E070-22605
chr11121566700121566827E070-1289
chr11121568019121568280E0700
chr11121568441121568627E070325
chr11121568682121568732E070566
chr11121570050121570144E0701934
chr11121570206121570256E0702090
chr11121570363121570752E0702247
chr11121570780121571186E0702664
chr11121571190121571380E0703074
chr11121595057121595568E07026941
chr11121611055121611334E07042939
chr11121611763121613570E07043647
chr11121520797121520948E071-47168
chr11121521041121521555E071-46561
chr11121527928121528106E071-40010
chr11121528137121528373E071-39743
chr11121540198121540740E071-27376
chr11121540951121544288E071-23828
chr11121544403121544443E071-23673
chr11121544596121544725E071-23391
chr11121562918121563337E071-4779
chr11121566397121566447E071-1669
chr11121566700121566827E071-1289
chr11121567760121567940E071-176
chr11121568019121568280E0710
chr11121568441121568627E071325
chr11121568682121568732E071566
chr11121569498121569548E0711382
chr11121569593121569643E0711477
chr11121570050121570144E0711934
chr11121571672121571734E0713556
chr11121571764121571853E0713648
chr11121571860121571977E0713744
chr11121572365121572510E0714249
chr11121572549121572725E0714433
chr11121611535121611630E07143419
chr11121611763121613570E07143647
chr11121524889121524975E072-43141
chr11121527928121528106E072-40010
chr11121528137121528373E072-39743
chr11121532578121533230E072-34886
chr11121533249121533346E072-34770
chr11121540198121540740E072-27376
chr11121540951121544288E072-23828
chr11121562918121563337E072-4779
chr11121566700121566827E072-1289
chr11121567760121567940E072-176
chr11121568019121568280E0720
chr11121568441121568627E072325
chr11121568682121568732E072566
chr11121570050121570144E0721934
chr11121570206121570256E0722090
chr11121570363121570752E0722247
chr11121570780121571186E0722664
chr11121571190121571380E0723074
chr11121571672121571734E0723556
chr11121571764121571853E0723648
chr11121571860121571977E0723744
chr11121572365121572510E0724249
chr11121572549121572725E0724433
chr11121611535121611630E07243419
chr11121611763121613570E07243647
chr11121527928121528106E073-40010
chr11121528137121528373E073-39743
chr11121540198121540740E073-27376
chr11121540951121544288E073-23828
chr11121562918121563337E073-4779
chr11121566700121566827E073-1289
chr11121566854121567611E073-505
chr11121567760121567940E073-176
chr11121568019121568280E0730
chr11121568441121568627E073325
chr11121568682121568732E073566
chr11121570050121570144E0731934
chr11121570780121571186E0732664
chr11121611535121611630E07343419
chr11121611763121613570E07343647
chr11121520356121520437E074-47679
chr11121520573121520729E074-47387
chr11121520797121520948E074-47168
chr11121521041121521555E074-46561
chr11121527928121528106E074-40010
chr11121528137121528373E074-39743
chr11121540198121540740E074-27376
chr11121540951121544288E074-23828
chr11121562918121563337E074-4779
chr11121565699121565857E074-2259
chr11121566397121566447E074-1669
chr11121567760121567940E074-176
chr11121568019121568280E0740
chr11121568441121568627E074325
chr11121568682121568732E074566
chr11121569498121569548E0741382
chr11121569593121569643E0741477
chr11121570050121570144E0741934
chr11121570206121570256E0742090
chr11121570363121570752E0742247
chr11121570780121571186E0742664
chr11121571190121571380E0743074
chr11121571672121571734E0743556
chr11121571764121571853E0743648
chr11121571860121571977E0743744
chr11121572365121572510E0744249
chr11121611535121611630E07443419
chr11121611763121613570E07443647
chr11121523164121523214E081-44902
chr11121523251121523389E081-44727
chr11121523575121524306E081-43810
chr11121524696121524849E081-43267
chr11121524889121524975E081-43141
chr11121527928121528106E081-40010
chr11121528137121528373E081-39743
chr11121535609121535653E081-32463
chr11121538448121538987E081-29129
chr11121539137121539303E081-28813
chr11121539312121539372E081-28744
chr11121539556121539632E081-28484
chr11121539847121540001E081-28115
chr11121540198121540740E081-27376
chr11121540951121544288E081-23828
chr11121544403121544443E081-23673
chr11121544596121544725E081-23391
chr11121565699121565857E081-2259
chr11121566700121566827E081-1289
chr11121566854121567611E081-505
chr11121567760121567940E081-176
chr11121568019121568280E0810
chr11121568441121568627E081325
chr11121568682121568732E081566
chr11121570363121570752E0812247
chr11121570780121571186E0812664
chr11121571190121571380E0813074
chr11121571672121571734E0813556
chr11121571764121571853E0813648
chr11121523164121523214E082-44902
chr11121523251121523389E082-44727
chr11121523575121524306E082-43810
chr11121527928121528106E082-40010
chr11121528137121528373E082-39743
chr11121538448121538987E082-29129
chr11121539137121539303E082-28813
chr11121539312121539372E082-28744
chr11121539556121539632E082-28484
chr11121539847121540001E082-28115
chr11121540198121540740E082-27376
chr11121566700121566827E082-1289
chr11121567760121567940E082-176
chr11121568019121568280E0820
chr11121570363121570752E0822247
chr11121570780121571186E0822664
chr11121571190121571380E0823074










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr11121592778121594748E06724662
chr11121592778121594748E06824662
chr11121592778121594748E06924662
chr11121592778121594748E07024662
chr11121592778121594748E07124662
chr11121592778121594748E07224662
chr11121592778121594748E07324662
chr11121592778121594748E07424662
chr11121592778121594748E08124662
chr11121592778121594748E08224662