SNP Detail Info-rs1736931

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.29710100A>C
GRCh38.p7 chr 6	NC_000006.12:g.29710100A>T
GRCh37.p13 chr 6	NC_000006.11:g.29677877A>C
GRCh37.p13 chr 6	NC_000006.11:g.29677877A>T
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_COX_CTG1	NT_113891.3:g.1196613T>A
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_COX_CTG1	NT_113891.3:g.1196613T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1	NT_113891.2:g.1196719T>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1	NT_113891.2:g.1196719T>C
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_QBL_CTG1	NT_167248.2:g.975586T>A
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_QBL_CTG1	NT_167248.2:g.975586T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1	NT_167248.1:g.981182T>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1	NT_167248.1:g.981182T>C
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_DBB_CTG1	NT_167245.2:g.975631T>A
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_DBB_CTG1	NT_167245.2:g.975631T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1	NT_167245.1:g.981216T>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1	NT_167245.1:g.981216T>C
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1	NT_167249.2:g.1019137A>C
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1	NT_167249.2:g.1019137A>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1	NT_167249.1:g.1018435A>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1	NT_167249.1:g.1018435A>T
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_MANN_CTG1	NT_167246.2:g.975200T>A
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_MANN_CTG1	NT_167246.2:g.975200T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1	NT_167246.1:g.980820T>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1	NT_167246.1:g.980820T>C
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_MCF_CTG1	NT_167247.2:g.975446T>A
GRCh38.p7 chr 6 alt locus HSCHR6_MHC_MCF_CTG1	NT_167247.2:g.975446T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1	NT_167247.1:g.981031T>A
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1	NT_167247.1:g.981031T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.334	T=0.666
1000Genomes	American	Sub	694	A=0.300	T=0.700
1000Genomes	East Asian	Sub	1008	A=0.350	T=0.650
1000Genomes	Europe	Sub	1006	A=0.315	T=0.685
1000Genomes	Global	Study-wide	5008	A=0.337	T=0.663
1000Genomes	South Asian	Sub	978	A=0.370	T=0.630
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.284	T=0.716
The Genome Aggregation Database	African	Sub	8682	A=0.318	T=0.682
The Genome Aggregation Database	American	Sub	836	A=0.280	T=0.72,
The Genome Aggregation Database	East Asian	Sub	1602	A=0.340	T=0.660
The Genome Aggregation Database	Europe	Sub	18400	A=0.317	T=0.682
The Genome Aggregation Database	Global	Study-wide	29820	A=0.317	T=0.682
The Genome Aggregation Database	Other	Sub	300	A=0.300	T=0.70,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.293	T=0.706
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.278	T=0.722

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr6:29677877	RPL23AP1	ENSG00000239257.1	A>T	3.1209e-7	-16782	Cerebellum
Chr6:29677877	MICE	ENSG00000273340.1	A>T	7.2793e-10	-35134	Cerebellum
Chr6:29677877	HLA-F-AS1	ENSG00000214922.5	A>T	8.4756e-13	-38893	Cerebellum
Chr6:29677877	MICE	ENSG00000273340.1	A>T	2.3222e-6	-35134	Cerebellar_Hemisphere
Chr6:29677877	HLA-F-AS1	ENSG00000214922.5	A>T	2.4717e-9	-38893	Cerebellar_Hemisphere
Chr6:29677877	HLA-H	ENSG00000206341.6	A>T	2.5783e-22	-178367	Cerebellar_Hemisphere
Chr6:29677877	HLA-H	ENSG00000206341.6	A>T	5.2793e-5	-178367	Caudate_basal_ganglia
Chr6:29677877	HLA-K	ENSG00000230795.2	A>T	3.1711e-10	-217078	Hippocampus
Chr6:29677877	HLA-K	ENSG00000230795.2	A>T	9.2361e-15	-217078	Nucleus_accumbens_basal_ganglia

rs1736931

Genomic Coordinates

Population Frequency

P-Value

eQTL of rs1736931 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs1736931 in Fetal Brain

Genomic View

Chromatin Interaction