rs17371334

Homo sapiens
T>G
LINC00333 : Intron Variant
LOC105370289 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0279 (8365/29916,GnomAD)
G=0314 (9156/29118,TOPMED)
G=0251 (1255/5008,1000G)
G=0348 (1341/3854,ALSPAC)
G=0351 (1301/3708,TWINSUK)
chr13:84458192 (GRCh38.p7) (13q31.1)
ND
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.84458192T>G
GRCh37.p13 chr 13NC_000013.10:g.85032327T>G

Gene: LINC00333, long intergenic non-protein coding RNA 333(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00333 transcriptNR_046871.1:n.N/AIntron Variant

Gene: LOC105370289, uncharacterized LOC105370289(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105370289 transcript variant X1XR_942133.1:n.N/AIntron Variant
LOC105370289 transcript variant X2XR_942134.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.765G=0.235
1000GenomesAmericanSub694T=0.620G=0.380
1000GenomesEast AsianSub1008T=0.863G=0.137
1000GenomesEuropeSub1006T=0.677G=0.323
1000GenomesGlobalStudy-wide5008T=0.749G=0.251
1000GenomesSouth AsianSub978T=0.780G=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.652G=0.348
The Genome Aggregation DatabaseAfricanSub8702T=0.746G=0.254
The Genome Aggregation DatabaseAmericanSub834T=0.600G=0.400
The Genome Aggregation DatabaseEast AsianSub1616T=0.884G=0.116
The Genome Aggregation DatabaseEuropeSub18462T=0.701G=0.298
The Genome Aggregation DatabaseGlobalStudy-wide29916T=0.720G=0.279
The Genome Aggregation DatabaseOtherSub302T=0.600G=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.685G=0.314
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.649G=0.351
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs173713344.31E-05nicotine smoking19268276

eQTL of rs17371334 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17371334 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138502080585021069E070-11258
chr138502125085021411E070-10916
chr138502145885022109E070-10218
chr138502219085022400E070-9927