rs17383790

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0163 (4892/29924,GnomAD)
C=0145 (4248/29118,TOPMED)
C=0146 (730/5008,1000G)
C=0182 (700/3854,ALSPAC)
C=0180 (666/3708,TWINSUK)
chr4:11318787 (GRCh38.p7) (4p15.33)
ND
GWASdb2
1   publication(s)
See rs on genome
34 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.11318787T>C
GRCh37.p13 chr 4NC_000004.11:g.11320411T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.886C=0.114
1000GenomesAmericanSub694T=0.910C=0.090
1000GenomesEast AsianSub1008T=0.894C=0.106
1000GenomesEuropeSub1006T=0.840C=0.160
1000GenomesGlobalStudy-wide5008T=0.854C=0.146
1000GenomesSouth AsianSub978T=0.750C=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.818C=0.182
The Genome Aggregation DatabaseAfricanSub8704T=0.871C=0.129
The Genome Aggregation DatabaseAmericanSub838T=0.910C=0.090
The Genome Aggregation DatabaseEast AsianSub1614T=0.895C=0.105
The Genome Aggregation DatabaseEuropeSub18466T=0.810C=0.189
The Genome Aggregation DatabaseGlobalStudy-wide29924T=0.836C=0.163
The Genome Aggregation DatabaseOtherSub302T=0.930C=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.854C=0.145
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.820C=0.180
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs173837902.58E-05alcohol and nictotine co-dependence20158304

eQTL of rs17383790 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17383790 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr41136874411368953E06748333
chr41136899111369366E06748580
chr41136874411368953E06848333
chr41136899111369366E06848580
chr41136957211369669E06849161
chr41136874411368953E06948333
chr41136899111369366E06948580
chr41136957211369669E06949161
chr41133902811339078E07018617
chr41136874411368953E07048333
chr41136899111369366E07048580
chr41136957211369669E07049161
chr41136826511368352E07147854
chr41136874411368953E07148333
chr41136899111369366E07148580
chr41136957211369669E07149161
chr41136826511368352E07247854
chr41136874411368953E07248333
chr41136874411368953E07448333
chr41136899111369366E07448580
chr41136957211369669E07449161
chr41130023711300323E081-20088
chr41130066311300951E081-19460
chr41130142011301849E081-18562
chr41130201911302308E081-18103
chr41133902811339078E08118617
chr41135279011353028E08132379
chr41135309011353156E08132679
chr41136874411368953E08148333
chr41136899111369366E08148580
chr41136957211369669E08149161
chr41130023711300323E082-20088
chr41130066311300951E082-19460
chr41136899111369366E08248580