rs17417367

Homo sapiens
A>G
LOC101928334 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0077 (2331/29970,GnomAD)
G=0069 (2025/29118,TOPMED)
G=0056 (279/5008,1000G)
chr1:101155173 (GRCh38.p7) (1p21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.101155173A>G
GRCh37.p13 chr 1NC_000001.10:g.101620729A>G

Gene: LOC101928334, uncharacterized LOC101928334(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101928334 transcript variant X1XR_001738166.1:n.N/AIntron Variant
LOC101928334 transcript variant X6XR_426736.3:n.N/AIntron Variant
LOC101928334 transcript variant X3XR_426737.3:n.N/AIntron Variant
LOC101928334 transcript variant X8XR_426738.3:n.N/AIntron Variant
LOC101928334 transcript variant X2XR_947636.1:n.N/AIntron Variant
LOC101928334 transcript variant X4XR_947637.2:n.N/AIntron Variant
LOC101928334 transcript variant X5XR_947640.2:n.N/AIntron Variant
LOC101928334 transcript variant X7XR_947639.2:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.992G=0.008
1000GenomesAmericanSub694A=0.930G=0.070
1000GenomesEast AsianSub1008A=0.950G=0.050
1000GenomesEuropeSub1006A=0.873G=0.127
1000GenomesGlobalStudy-wide5008A=0.944G=0.056
1000GenomesSouth AsianSub978A=0.960G=0.040
The Genome Aggregation DatabaseAfricanSub8724A=0.974G=0.026
The Genome Aggregation DatabaseAmericanSub838A=0.930G=0.070
The Genome Aggregation DatabaseEast AsianSub1620A=0.958G=0.042
The Genome Aggregation DatabaseEuropeSub18486A=0.895G=0.104
The Genome Aggregation DatabaseGlobalStudy-wide29970A=0.922G=0.077
The Genome Aggregation DatabaseOtherSub302A=0.830G=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.930G=0.069
PMID Title Author Journal
22096494A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.Zuo LPLoS One

P-Value

SNP ID p-value Traits Study
rs174173676.7E-05alcohol dependence22096494

eQTL of rs17417367 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17417367 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1101668748101668891E06748019
chr1101576976101578430E068-42299
chr1101571536101571767E070-48962
chr1101620106101620482E070-247
chr1101620584101620660E070-69
chr1101620779101620871E07050
chr1101621493101621543E070764
chr1101668579101668701E07047850
chr1101668748101668891E07048019
chr1101669071101669204E07048342
chr1101620106101620482E081-247
chr1101620584101620660E081-69
chr1101620779101620871E08150
chr1101621493101621543E082764