SNP Detail Info-rs17417367

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC101928334 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0077 (2331/29970,GnomAD)
G=0069 (2025/29118,TOPMED)
G=0056 (279/5008,1000G)

Position: chr1:101155173 (GRCh38.p7) (1p21.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 14 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.101155173A>G
GRCh37.p13 chr 1	NC_000001.10:g.101620729A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC101928334 transcript variant X1	XR_001738166.1:n.	N/A	Intron Variant
LOC101928334 transcript variant X6	XR_426736.3:n.	N/A	Intron Variant
LOC101928334 transcript variant X3	XR_426737.3:n.	N/A	Intron Variant
LOC101928334 transcript variant X8	XR_426738.3:n.	N/A	Intron Variant
LOC101928334 transcript variant X2	XR_947636.1:n.	N/A	Intron Variant
LOC101928334 transcript variant X4	XR_947637.2:n.	N/A	Intron Variant
LOC101928334 transcript variant X5	XR_947640.2:n.	N/A	Intron Variant
LOC101928334 transcript variant X7	XR_947639.2:n.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.992	G=0.008
1000Genomes	American	Sub	694	A=0.930	G=0.070
1000Genomes	East Asian	Sub	1008	A=0.950	G=0.050
1000Genomes	Europe	Sub	1006	A=0.873	G=0.127
1000Genomes	Global	Study-wide	5008	A=0.944	G=0.056
1000Genomes	South Asian	Sub	978	A=0.960	G=0.040
The Genome Aggregation Database	African	Sub	8724	A=0.974	G=0.026
The Genome Aggregation Database	American	Sub	838	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1620	A=0.958	G=0.042
The Genome Aggregation Database	Europe	Sub	18486	A=0.895	G=0.104
The Genome Aggregation Database	Global	Study-wide	29970	A=0.922	G=0.077
The Genome Aggregation Database	Other	Sub	302	A=0.830	G=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.930	G=0.069

PMID	Title	Author	Journal
22096494	A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.	Zuo L	PLoS One

SNP ID	p-value	Traits	Study
rs17417367	6.7E-05	alcohol dependence	22096494

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	101668748	101668891	E067	48019
chr1	101576976	101578430	E068	-42299
chr1	101571536	101571767	E070	-48962
chr1	101620106	101620482	E070	-247
chr1	101620584	101620660	E070	-69
chr1	101620779	101620871	E070	50
chr1	101621493	101621543	E070	764
chr1	101668579	101668701	E070	47850
chr1	101668748	101668891	E070	48019
chr1	101669071	101669204	E070	48342
chr1	101620106	101620482	E081	-247
chr1	101620584	101620660	E081	-69
chr1	101620779	101620871	E081	50
chr1	101621493	101621543	E082	764

rs17417367