SNP Detail Info-rs17437983

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0270 (8088/29870,GnomAD)
C=0255 (7437/29118,TOPMED)
C=0228 (1140/5008,1000G)
C=0309 (1189/3854,ALSPAC)
C=0317 (1175/3708,TWINSUK)

Position: chr6:92965114 (GRCh38.p7) (6q16.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.92965114T>C
GRCh37.p13 chr 6	NC_000006.11:g.93674832T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.882	C=0.118
1000Genomes	American	Sub	694	T=0.670	C=0.330
1000Genomes	East Asian	Sub	1008	T=0.837	C=0.163
1000Genomes	Europe	Sub	1006	T=0.674	C=0.326
1000Genomes	Global	Study-wide	5008	T=0.772	C=0.228
1000Genomes	South Asian	Sub	978	T=0.730	C=0.270
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.691	C=0.309
The Genome Aggregation Database	African	Sub	8698	T=0.848	C=0.152
The Genome Aggregation Database	American	Sub	838	T=0.670	C=0.330
The Genome Aggregation Database	East Asian	Sub	1600	T=0.835	C=0.165
The Genome Aggregation Database	Europe	Sub	18432	T=0.668	C=0.331
The Genome Aggregation Database	Global	Study-wide	29870	T=0.729	C=0.270
The Genome Aggregation Database	Other	Sub	302	T=0.650	C=0.350
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.744	C=0.255
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.683	C=0.317

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs17437983	5.75E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17437983