rs17479823

Homo sapiens
C>G / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0023 (688/29950,GnomAD)
T=0012 (370/29118,TOPMED)
T=0004 (18/5008,1000G)
T=0014 (55/3854,ALSPAC)
T=0013 (47/3708,TWINSUK)
chr3:161511426 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
29 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.161511426C>G
GRCh38.p7 chr 3NC_000003.12:g.161511426C>T
GRCh37.p13 chr 3NC_000003.11:g.161229214C>G
GRCh37.p13 chr 3NC_000003.11:g.161229214C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.999T=0.001
1000GenomesAmericanSub694C=1.000T=0.000
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.988T=0.012
1000GenomesGlobalStudy-wide5008C=0.996T=0.004
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.986T=0.014
The Genome Aggregation DatabaseAfricanSub8724C=0.997G=0.000
The Genome Aggregation DatabaseAmericanSub836C=0.990G=0.00,
The Genome Aggregation DatabaseEast AsianSub1598C=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18490C=0.964G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.977G=0.000
The Genome Aggregation DatabaseOtherSub302C=0.990G=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.987T=0.012
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.987T=0.013
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs174798232.67E-05alcohol dependence21703634

eQTL of rs17479823 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr3:161229214SPTSSBENSG00000196542.4C>T4.3204e-4138546Cerebellum

meQTL of rs17479823 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3169481434169481488E0684423
chr3169481550169481740E0684539
chr3169492866169492966E06815855
chr3169493212169493277E06816201
chr3169492866169492966E07015855
chr3169492866169492966E07115855
chr3169481550169481740E0814539
chr3169492866169492966E08115855
chr3169492866169492966E08215855
chr3169493212169493277E08216201





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3169481774169483593E0674763
chr3169487066169487937E06710055
chr3169489335169491885E06712324
chr3169481774169483593E0684763
chr3169487066169487937E06810055
chr3169489335169491885E06812324
chr3169481774169483593E0694763
chr3169487066169487937E06910055
chr3169489335169491885E06912324
chr3169481774169483593E0704763
chr3169487066169487937E07010055
chr3169489335169491885E07012324
chr3169481774169483593E0714763
chr3169487066169487937E07110055
chr3169489335169491885E07112324
chr3169481774169483593E0724763
chr3169487066169487937E07210055
chr3169489335169491885E07212324
chr3169481774169483593E0734763
chr3169487066169487937E07310055
chr3169489335169491885E07312324
chr3169481774169483593E0744763
chr3169487066169487937E07410055
chr3169489335169491885E07412324
chr3169481774169483593E0814763
chr3169487066169487937E08110055
chr3169481774169483593E0824763
chr3169487066169487937E08210055
chr3169489335169491885E08212324