SNP Detail Info-rs17487852

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC101927849 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0023 (710/29896,GnomAD)
G=0024 (720/29118,TOPMED)
G=0016 (82/5008,1000G)
G=0031 (119/3854,ALSPAC)
G=0034 (126/3708,TWINSUK)

Position: chr4:149207696 (GRCh38.p7) (4q31.23)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.149207696A>G
GRCh37.p13 chr 4	NC_000004.11:g.150128848A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LINC02355 transcript	NR_125887.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.999	G=0.001
1000Genomes	American	Sub	694	A=0.960	G=0.040
1000Genomes	East Asian	Sub	1008	A=0.992	G=0.008
1000Genomes	Europe	Sub	1006	A=0.979	G=0.021
1000Genomes	Global	Study-wide	5008	A=0.984	G=0.016
1000Genomes	South Asian	Sub	978	A=0.980	G=0.020
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.969	G=0.031
The Genome Aggregation Database	African	Sub	8720	A=0.991	G=0.009
The Genome Aggregation Database	American	Sub	834	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1570	A=0.996	G=0.004
The Genome Aggregation Database	Europe	Sub	18470	A=0.969	G=0.030
The Genome Aggregation Database	Global	Study-wide	29896	A=0.976	G=0.023
The Genome Aggregation Database	Other	Sub	302	A=0.970	G=0.030
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.975	G=0.024
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.966	G=0.034

PMID	Title	Author	Journal
21956439	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Zuo L	Neuropsychopharmacology

SNP ID	p-value	Traits	Study
rs17487852	4E-06	alcohol dependence	21956439

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	150169398	150169520	E068	40550
chr4	150169634	150169684	E068	40786
chr4	150169694	150169943	E068	40846
chr4	150168432	150168552	E074	39584

rs17487852