| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 18 | NC_000018.10:g.38087951A>G |
| GRCh37.p13 chr 18 | NC_000018.9:g.35667915A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.948 | G=0.052 |
| 1000Genomes | American | Sub | 694 | A=0.920 | G=0.080 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.984 | G=0.016 |
| 1000Genomes | Europe | Sub | 1006 | A=0.834 | G=0.166 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.903 | G=0.097 |
| 1000Genomes | South Asian | Sub | 978 | A=0.810 | G=0.190 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.857 | G=0.143 |
| The Genome Aggregation Database | African | Sub | 8728 | A=0.935 | G=0.065 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.930 | G=0.070 |
| The Genome Aggregation Database | East Asian | Sub | 1622 | A=0.990 | G=0.010 |
| The Genome Aggregation Database | Europe | Sub | 18482 | A=0.845 | G=0.154 |
| The Genome Aggregation Database | Global | Study-wide | 29970 | A=0.880 | G=0.119 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.790 | G=0.210 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.879 | G=0.120 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.834 | G=0.166 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs17536346 | 0.0006 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr18 | 35668000 | 35668050 | E070 | 85 |
| chr18 | 35668324 | 35668374 | E070 | 409 |
| chr18 | 35626407 | 35627079 | E081 | -40836 |
| chr18 | 35627282 | 35627336 | E081 | -40579 |
| chr18 | 35627388 | 35627485 | E081 | -40430 |
| chr18 | 35627565 | 35627667 | E081 | -40248 |
| chr18 | 35646786 | 35648258 | E081 | -19657 |
| chr18 | 35648394 | 35648444 | E081 | -19471 |
| chr18 | 35626407 | 35627079 | E082 | -40836 |
| chr18 | 35627282 | 35627336 | E082 | -40579 |
| chr18 | 35627388 | 35627485 | E082 | -40430 |
| chr18 | 35627565 | 35627667 | E082 | -40248 |