rs17563093

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0269 (8076/29942,GnomAD)
G=0236 (6885/29118,TOPMED)
G=0223 (1116/5008,1000G)
G=0328 (1263/3854,ALSPAC)
G=0325 (1204/3708,TWINSUK)
chr7:54640363 (GRCh38.p7) (7p11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.54640363A>G
GRCh37.p13 chr 7NC_000007.13:g.54708056A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.909G=0.091
1000GenomesAmericanSub694A=0.750G=0.250
1000GenomesEast AsianSub1008A=0.824G=0.176
1000GenomesEuropeSub1006A=0.659G=0.341
1000GenomesGlobalStudy-wide5008A=0.777G=0.223
1000GenomesSouth AsianSub978A=0.690G=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.672G=0.328
The Genome Aggregation DatabaseAfricanSub8718A=0.861G=0.139
The Genome Aggregation DatabaseAmericanSub836A=0.720G=0.280
The Genome Aggregation DatabaseEast AsianSub1618A=0.808G=0.192
The Genome Aggregation DatabaseEuropeSub18470A=0.663G=0.336
The Genome Aggregation DatabaseGlobalStudy-wide29942A=0.730G=0.269
The Genome Aggregation DatabaseOtherSub300A=0.690G=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.763G=0.236
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.675G=0.325
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs175630930.000475alcohol dependence20201924

eQTL of rs17563093 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17563093 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr75475705754757169E07349001
chr75473137754731470E08123321
chr75475722554757423E08149169
chr75475742954757671E08149373


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr75473158654732791E06723530
chr75473158654732791E06823530
chr75473158654732791E06923530
chr75473158654732791E07023530
chr75473158654732791E07123530
chr75473158654732791E07223530
chr75473158654732791E07323530
chr75473158654732791E07423530
chr75473158654732791E08123530
chr75473158654732791E08223530