rs1760981

Homo sapiens
T>C / T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0231 (6941/29942,GnomAD)
G=0234 (6825/29118,TOPMED)
G=0204 (1020/5008,1000G)
G=0293 (1130/3854,ALSPAC)
G=0278 (1030/3708,TWINSUK)
chr14:65187177 (GRCh38.p7) (14q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
116 Enhancers around
22 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.65187177T>C
GRCh38.p7 chr 14NC_000014.9:g.65187177T>G
GRCh37.p13 chr 14NC_000014.8:g.65653895T>C
GRCh37.p13 chr 14NC_000014.8:g.65653895T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.846G=0.154
1000GenomesAmericanSub694T=0.790G=0.210
1000GenomesEast AsianSub1008T=0.753G=0.247
1000GenomesEuropeSub1006T=0.726G=0.274
1000GenomesGlobalStudy-wide5008T=0.796G=0.204
1000GenomesSouth AsianSub978T=0.850G=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.707G=0.293
The Genome Aggregation DatabaseAfricanSub8720T=0.816C=0.000
The Genome Aggregation DatabaseAmericanSub838T=0.790C=0.00,
The Genome Aggregation DatabaseEast AsianSub1616T=0.814C=0.000
The Genome Aggregation DatabaseEuropeSub18466T=0.742C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29942T=0.768C=0.000
The Genome Aggregation DatabaseOtherSub302T=0.690C=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.765G=0.234
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.722G=0.278
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs17609810.000538alcohol dependence20201924

eQTL of rs1760981 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1760981 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr149705010997050260E067-7738
chr149704060297041571E068-16427
chr149707029897070396E06812300
chr149704060297041571E070-16427
chr149704162097041752E070-16246
chr149704831297048461E070-9537
chr149704862097048740E070-9258
chr149704875597048805E070-9193
chr149704894897049036E070-8962
chr149704914197049209E070-8789
chr149705032597050476E070-7522
chr149705053897051312E070-6686
chr149705137197051421E070-6577
chr149705148597051572E070-6426
chr149705168097051741E070-6257
chr149705186297051976E070-6022
chr149705206797052175E070-5823
chr149705225397052367E070-5631
chr149705247697052597E070-5401
chr149705275397052860E070-5138
chr149705320097053309E070-4689
chr149705336897053488E070-4510
chr149705352597053563E070-4435
chr149705393297054033E070-3965
chr149705472197054771E070-3227
chr149705523097055881E070-2117
chr149705593297056198E070-1800
chr149706493097065219E0706932
chr149706545797065507E0707459
chr149706553697065595E0707538
chr149709083497091482E07032836
chr149709159797091860E07033599
chr149709186597091986E07033867
chr149709240597092482E07034407
chr149709269697092746E07034698
chr149709285397092912E07034855
chr149709418797094237E07036189
chr149709438597094456E07036387
chr149705010997050260E072-7738
chr149703371497033951E081-24047
chr149703398197034032E081-23966
chr149703425597034336E081-23662
chr149703670897037105E081-20893
chr149704665797046733E081-11265
chr149704694297047248E081-10750
chr149704736697047507E081-10491
chr149704759197047645E081-10353
chr149704768797047737E081-10261
chr149704796197048101E081-9897
chr149704820597048309E081-9689
chr149704831297048461E081-9537
chr149704862097048740E081-9258
chr149704875597048805E081-9193
chr149704894897049036E081-8962
chr149704914197049209E081-8789
chr149704978897049964E081-8034
chr149705003497050088E081-7910
chr149705010997050260E081-7738
chr149705032597050476E081-7522
chr149705053897051312E081-6686
chr149705137197051421E081-6577
chr149705148597051572E081-6426
chr149705168097051741E081-6257
chr149705186297051976E081-6022
chr149705206797052175E081-5823
chr149705225397052367E081-5631
chr149705247697052597E081-5401
chr149705275397052860E081-5138
chr149705320097053309E081-4689
chr149705336897053488E081-4510
chr149705352597053563E081-4435
chr149705393297054033E081-3965
chr149705523097055881E081-2117
chr149705593297056198E081-1800
chr149706493097065219E0816932
chr149708346597083579E08125467
chr149709014897090198E08132150
chr149709083497091482E08132836
chr149709159797091860E08133599
chr149709186597091986E08133867
chr149709240597092482E08134407
chr149709269697092746E08134698
chr149709285397092912E08134855
chr149709418797094237E08136189
chr149709438597094456E08136387
chr149709445797094530E08136459
chr149703670897037105E082-20893
chr149704665797046733E082-11265
chr149704694297047248E082-10750
chr149704736697047507E082-10491
chr149704978897049964E082-8034
chr149705003497050088E082-7910
chr149705010997050260E082-7738
chr149705032597050476E082-7522
chr149705053897051312E082-6686
chr149705137197051421E082-6577
chr149705148597051572E082-6426
chr149705168097051741E082-6257
chr149705186297051976E082-6022
chr149705206797052175E082-5823
chr149705225397052367E082-5631
chr149705247697052597E082-5401
chr149705275397052860E082-5138
chr149705320097053309E082-4689
chr149705336897053488E082-4510
chr149705352597053563E082-4435
chr149705393297054033E082-3965
chr149707930897079358E08221310
chr149707995797080030E08221959
chr149708346597083579E08225467
chr149709083497091482E08232836
chr149709159797091860E08233599
chr149709186597091986E08233867
chr149709240597092482E08234407
chr149709269697092746E08234698
chr149709285397092912E08234855






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr149705862197058708E067623
chr149705873797059384E067739
chr149705939697059646E0671398
chr149705862197058708E068623
chr149705873797059384E068739
chr149705939697059646E0681398
chr149705862197058708E069623
chr149705873797059384E069739
chr149705939697059646E0691398
chr149705862197058708E070623
chr149705873797059384E070739
chr149705939697059646E0701398
chr149705862197058708E072623
chr149705873797059384E072739
chr149705939697059646E0721398
chr149705862197058708E073623
chr149705873797059384E073739
chr149705939697059646E0731398
chr149705873797059384E074739
chr149705862197058708E082623
chr149705873797059384E082739
chr149705939697059646E0821398