SNP Detail Info-rs17614422

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

LOC105370301 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0066 (2002/29964,GnomAD)
A=0068 (2003/29118,TOPMED)
A=0057 (286/5008,1000G)
A=0104 (402/3854,ALSPAC)
A=0103 (381/3708,TWINSUK)

Position: chr13:87042816 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87042816C>A
GRCh37.p13 chr 13	NC_000013.10:g.87695071C>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105370301 transcript variant X1	XR_931623.2:n.	N/A	Intron Variant
LOC105370301 transcript variant X2	XR_931624.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.982	A=0.018
1000Genomes	American	Sub	694	C=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	C=0.968	A=0.032
1000Genomes	Europe	Sub	1006	C=0.908	A=0.092
1000Genomes	Global	Study-wide	5008	C=0.943	A=0.057
1000Genomes	South Asian	Sub	978	C=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8714	C=0.971	A=0.029
The Genome Aggregation Database	American	Sub	838	C=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1618	C=0.954	A=0.046
The Genome Aggregation Database	Europe	Sub	18494	C=0.914	A=0.085
The Genome Aggregation Database	Global	Study-wide	29964	C=0.933	A=0.066
The Genome Aggregation Database	Other	Sub	300	C=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.931	A=0.068
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.897	A=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs17614422	9.77E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87695071	SLITRK5	ENSG00000165300.6	C>A	7.2166e-3	-629799	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs17614422