SNP Detail Info-rs17624782

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.17058471G>T
GRCh37.p13 chr 8	NC_000008.10:g.16915980G>T

Gene: MICU3, mitochondrial calcium uptake family member 3(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
MICU3 transcript variant 1	NM_181723.2:c.	N/A	Intron Variant
MICU3 transcript variant X4	XM_005273477.2:c.	N/A	Intron Variant
MICU3 transcript variant X6	XM_006716328.2:c.	N/A	Intron Variant
MICU3 transcript variant X7	XM_006716329.2:c.	N/A	Intron Variant
MICU3 transcript variant X9	XM_006716330.2:c.	N/A	Intron Variant
MICU3 transcript variant X27	XM_006716333.3:c.	N/A	Intron Variant
MICU3 transcript variant X4	XM_011544507.2:c.	N/A	Intron Variant
MICU3 transcript variant X21	XM_011544508.2:c.	N/A	Intron Variant
MICU3 transcript variant X5	XM_017013336.1:c.	N/A	Intron Variant
MICU3 transcript variant X10	XM_017013337.1:c.	N/A	Intron Variant
MICU3 transcript variant X12	XM_017013338.1:c.	N/A	Intron Variant
MICU3 transcript variant X14	XM_017013339.1:c.	N/A	Intron Variant
MICU3 transcript variant X15	XM_017013340.1:c.	N/A	Intron Variant
MICU3 transcript variant X17	XM_017013341.1:c.	N/A	Intron Variant
MICU3 transcript variant X18	XM_017013342.1:c.	N/A	Intron Variant
MICU3 transcript variant X28	XM_017013343.1:c.	N/A	Intron Variant
MICU3 transcript variant X1	XR_001745513.1:n.	N/A	Intron Variant
MICU3 transcript variant X2	XR_001745514.1:n.	N/A	Intron Variant
MICU3 transcript variant X3	XR_001745515.1:n.	N/A	Intron Variant
MICU3 transcript variant X8	XR_001745516.1:n.	N/A	Intron Variant
MICU3 transcript variant X11	XR_001745517.1:n.	N/A	Intron Variant
MICU3 transcript variant X16	XR_001745518.1:n.	N/A	Intron Variant
MICU3 transcript variant X19	XR_001745519.1:n.	N/A	Intron Variant
MICU3 transcript variant X20	XR_001745520.1:n.	N/A	Intron Variant
MICU3 transcript variant X23	XR_001745521.1:n.	N/A	Intron Variant
MICU3 transcript variant X25	XR_001745522.1:n.	N/A	Intron Variant
MICU3 transcript variant X29	XR_001745523.1:n.	N/A	Intron Variant
MICU3 transcript variant X27	XR_428309.2:n.	N/A	Intron Variant
MICU3 transcript variant X13	XR_949390.2:n.	N/A	Intron Variant
MICU3 transcript variant X22	XR_949392.2:n.	N/A	Intron Variant
MICU3 transcript variant X25	XR_949393.2:n.	N/A	Intron Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.989	T=0.011
1000Genomes	American	Sub	694	G=0.890	T=0.110
1000Genomes	East Asian	Sub	1008	G=0.750	T=0.250
1000Genomes	Europe	Sub	1006	G=0.903	T=0.097
1000Genomes	Global	Study-wide	5008	G=0.888	T=0.112
1000Genomes	South Asian	Sub	978	G=0.880	T=0.120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.932	T=0.068
The Genome Aggregation Database	African	Sub	8722	G=0.983	T=0.017
The Genome Aggregation Database	American	Sub	836	G=0.920	T=0.080
The Genome Aggregation Database	East Asian	Sub	1614	G=0.735	T=0.265
The Genome Aggregation Database	Europe	Sub	18438	G=0.932	T=0.067
The Genome Aggregation Database	Global	Study-wide	29912	G=0.935	T=0.064
The Genome Aggregation Database	Other	Sub	302	G=0.830	T=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.947	T=0.052
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.939	T=0.061

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs17624782	0.00099	alcohol dependence	20201924

eQTL of rs17624782 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs17624782 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr8	16908833	16909548	E067	-6432
chr8	16914687	16914849	E067	-1131
chr8	16932656	16932752	E067	16676
chr8	16957367	16957443	E067	41387
chr8	16957593	16957757	E067	41613
chr8	16910754	16910828	E068	-5152
chr8	16910830	16910948	E068	-5032
chr8	16911395	16911708	E068	-4272
chr8	16957367	16957443	E068	41387
chr8	16957593	16957757	E068	41613
chr8	16908833	16909548	E069	-6432
chr8	16957367	16957443	E069	41387
chr8	16957593	16957757	E069	41613
chr8	16957367	16957443	E070	41387
chr8	16957593	16957757	E070	41613
chr8	16908833	16909548	E071	-6432
chr8	16957367	16957443	E071	41387
chr8	16957593	16957757	E071	41613
chr8	16883357	16883407	E072	-32573
chr8	16883566	16883721	E072	-32259
chr8	16908833	16909548	E072	-6432
chr8	16932656	16932752	E072	16676
chr8	16932768	16933027	E072	16788
chr8	16883566	16883721	E073	-32259
chr8	16908833	16909548	E073	-6432
chr8	16883566	16883721	E074	-32259
chr8	16908833	16909548	E074	-6432
chr8	16910830	16910948	E074	-5032
chr8	16932394	16932459	E074	16414
chr8	16932656	16932752	E074	16676
chr8	16932768	16933027	E074	16788
chr8	16957367	16957443	E074	41387
chr8	16957593	16957757	E074	41613

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr8	16883735	16886285	E067	-29695
chr8	16870478	16871142	E068	-44838
chr8	16883735	16886285	E068	-29695
chr8	16883735	16886285	E069	-29695
chr8	16883735	16886285	E070	-29695
chr8	16883735	16886285	E071	-29695
chr8	16883735	16886285	E072	-29695
chr8	16883735	16886285	E073	-29695
chr8	16883735	16886285	E074	-29695
chr8	16883735	16886285	E081	-29695
chr8	16883735	16886285	E082	-29695

rs17624782

Genomic Coordinates

Gene: MICU3, mitochondrial calcium uptake family member 3(plus strand)

Population Frequency

P-Value

eQTL of rs17624782 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs17624782 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Promoter Annotation (GRCh37.p13)