SNP Detail Info-rs17633211

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0034 (1042/29992,GnomAD)
C=0025 (743/29118,TOPMED)
C=0044 (221/5008,1000G)
C=0044 (171/3854,ALSPAC)
C=0046 (170/3708,TWINSUK)

Position: chr11:109114778 (GRCh38.p7) (11q22.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 20 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.109114778T>C
GRCh37.p13 chr 11	NC_000011.9:g.108985505T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.996	C=0.004
1000Genomes	American	Sub	694	T=0.940	C=0.060
1000Genomes	East Asian	Sub	1008	T=0.976	C=0.024
1000Genomes	Europe	Sub	1006	T=0.959	C=0.041
1000Genomes	Global	Study-wide	5008	T=0.956	C=0.044
1000Genomes	South Asian	Sub	978	T=0.890	C=0.110
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.956	C=0.044
The Genome Aggregation Database	African	Sub	8734	T=0.991	C=0.009
The Genome Aggregation Database	American	Sub	838	T=0.930	C=0.070
The Genome Aggregation Database	East Asian	Sub	1618	T=0.976	C=0.024
The Genome Aggregation Database	Europe	Sub	18500	T=0.954	C=0.045
The Genome Aggregation Database	Global	Study-wide	29992	T=0.965	C=0.034
The Genome Aggregation Database	Other	Sub	302	T=0.940	C=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.974	C=0.025
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.954	C=0.046

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs17633211	9.33E-05	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr11	108982801	108984125	E070	-1380
chr11	108984207	108984257	E070	-1248
chr11	108984380	108984430	E070	-1075
chr11	108984586	108984685	E070	-820
chr11	108985289	108985888	E070	0
chr11	108985982	108986066	E070	477
chr11	108992332	108992570	E070	6827
chr11	109019535	109019647	E074	34030
chr11	109019677	109019809	E074	34172
chr11	108942088	108942306	E081	-43199
chr11	108942408	108943081	E081	-42424
chr11	108943156	108943381	E081	-42124
chr11	108982801	108984125	E081	-1380
chr11	108984207	108984257	E081	-1248
chr11	108984380	108984430	E081	-1075
chr11	108984586	108984685	E081	-820
chr11	108982801	108984125	E082	-1380
chr11	108984207	108984257	E082	-1248
chr11	108984380	108984430	E082	-1075
chr11	108984586	108984685	E082	-820

rs17633211