rs17633211

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0034 (1042/29992,GnomAD)
C=0025 (743/29118,TOPMED)
C=0044 (221/5008,1000G)
C=0044 (171/3854,ALSPAC)
C=0046 (170/3708,TWINSUK)
chr11:109114778 (GRCh38.p7) (11q22.3)
ND
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.109114778T>C
GRCh37.p13 chr 11NC_000011.9:g.108985505T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.996C=0.004
1000GenomesAmericanSub694T=0.940C=0.060
1000GenomesEast AsianSub1008T=0.976C=0.024
1000GenomesEuropeSub1006T=0.959C=0.041
1000GenomesGlobalStudy-wide5008T=0.956C=0.044
1000GenomesSouth AsianSub978T=0.890C=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.956C=0.044
The Genome Aggregation DatabaseAfricanSub8734T=0.991C=0.009
The Genome Aggregation DatabaseAmericanSub838T=0.930C=0.070
The Genome Aggregation DatabaseEast AsianSub1618T=0.976C=0.024
The Genome Aggregation DatabaseEuropeSub18500T=0.954C=0.045
The Genome Aggregation DatabaseGlobalStudy-wide29992T=0.965C=0.034
The Genome Aggregation DatabaseOtherSub302T=0.940C=0.060
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.974C=0.025
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.954C=0.046
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs176332119.33E-05nicotine dependence17158188

eQTL of rs17633211 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17633211 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr11108982801108984125E070-1380
chr11108984207108984257E070-1248
chr11108984380108984430E070-1075
chr11108984586108984685E070-820
chr11108985289108985888E0700
chr11108985982108986066E070477
chr11108992332108992570E0706827
chr11109019535109019647E07434030
chr11109019677109019809E07434172
chr11108942088108942306E081-43199
chr11108942408108943081E081-42424
chr11108943156108943381E081-42124
chr11108982801108984125E081-1380
chr11108984207108984257E081-1248
chr11108984380108984430E081-1075
chr11108984586108984685E081-820
chr11108982801108984125E082-1380
chr11108984207108984257E082-1248
chr11108984380108984430E082-1075
chr11108984586108984685E082-820