Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.109115147C>G |
GRCh38.p7 chr 11 | NC_000011.10:g.109115147C>T |
GRCh37.p13 chr 11 | NC_000011.9:g.108985874C>G |
GRCh37.p13 chr 11 | NC_000011.9:g.108985874C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.996 | G=0.004 |
1000Genomes | American | Sub | 694 | C=0.940 | G=0.060 |
1000Genomes | East Asian | Sub | 1008 | C=0.976 | G=0.024 |
1000Genomes | Europe | Sub | 1006 | C=0.959 | G=0.041 |
1000Genomes | Global | Study-wide | 5008 | C=0.956 | G=0.044 |
1000Genomes | South Asian | Sub | 978 | C=0.890 | G=0.110 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.956 | G=0.044 |
The Genome Aggregation Database | African | Sub | 8720 | C=0.991 | G=0.009 |
The Genome Aggregation Database | American | Sub | 838 | C=0.930 | G=0.070 |
The Genome Aggregation Database | East Asian | Sub | 1620 | C=0.976 | G=0.024 |
The Genome Aggregation Database | Europe | Sub | 18502 | C=0.954 | G=0.045 |
The Genome Aggregation Database | Global | Study-wide | 29982 | C=0.965 | G=0.034 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.940 | G=0.060 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.954 | G=0.046 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs17633258 | 7.31E-05 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 3753612 | 3753662 | E067 | -40929 |
chr11 | 3754045 | 3754146 | E067 | -40445 |
chr11 | 3754162 | 3754343 | E067 | -40248 |
chr11 | 3754385 | 3754579 | E067 | -40012 |
chr11 | 3807894 | 3808458 | E067 | 13303 |
chr11 | 3815833 | 3815934 | E067 | 21242 |
chr11 | 3816045 | 3816125 | E067 | 21454 |
chr11 | 3816400 | 3816450 | E067 | 21809 |
chr11 | 3844079 | 3844129 | E067 | 49488 |
chr11 | 3844130 | 3844218 | E067 | 49539 |
chr11 | 3753612 | 3753662 | E068 | -40929 |
chr11 | 3754045 | 3754146 | E068 | -40445 |
chr11 | 3754162 | 3754343 | E068 | -40248 |
chr11 | 3754385 | 3754579 | E068 | -40012 |
chr11 | 3803190 | 3803352 | E068 | 8599 |
chr11 | 3803397 | 3803460 | E068 | 8806 |
chr11 | 3803528 | 3803666 | E068 | 8937 |
chr11 | 3807152 | 3807248 | E068 | 12561 |
chr11 | 3807334 | 3807479 | E068 | 12743 |
chr11 | 3807483 | 3807563 | E068 | 12892 |
chr11 | 3807661 | 3807701 | E068 | 13070 |
chr11 | 3807894 | 3808458 | E068 | 13303 |
chr11 | 3808629 | 3808754 | E068 | 14038 |
chr11 | 3808783 | 3808976 | E068 | 14192 |
chr11 | 3831820 | 3832542 | E068 | 37229 |
chr11 | 3832585 | 3832692 | E068 | 37994 |
chr11 | 3807334 | 3807479 | E069 | 12743 |
chr11 | 3807483 | 3807563 | E069 | 12892 |
chr11 | 3807661 | 3807701 | E069 | 13070 |
chr11 | 3807894 | 3808458 | E069 | 13303 |
chr11 | 3816045 | 3816125 | E069 | 21454 |
chr11 | 3816400 | 3816450 | E069 | 21809 |
chr11 | 3753612 | 3753662 | E071 | -40929 |
chr11 | 3754045 | 3754146 | E071 | -40445 |
chr11 | 3754162 | 3754343 | E071 | -40248 |
chr11 | 3754385 | 3754579 | E071 | -40012 |
chr11 | 3807152 | 3807248 | E071 | 12561 |
chr11 | 3807334 | 3807479 | E071 | 12743 |
chr11 | 3807483 | 3807563 | E071 | 12892 |
chr11 | 3807661 | 3807701 | E071 | 13070 |
chr11 | 3807894 | 3808458 | E071 | 13303 |
chr11 | 3808629 | 3808754 | E071 | 14038 |
chr11 | 3753612 | 3753662 | E072 | -40929 |
chr11 | 3754045 | 3754146 | E072 | -40445 |
chr11 | 3754162 | 3754343 | E072 | -40248 |
chr11 | 3754385 | 3754579 | E072 | -40012 |
chr11 | 3807894 | 3808458 | E072 | 13303 |
chr11 | 3831474 | 3831533 | E073 | 36883 |
chr11 | 3752843 | 3752917 | E074 | -41674 |
chr11 | 3753612 | 3753662 | E074 | -40929 |
chr11 | 3754045 | 3754146 | E074 | -40445 |
chr11 | 3754162 | 3754343 | E074 | -40248 |
chr11 | 3754385 | 3754579 | E074 | -40012 |
chr11 | 3806427 | 3806740 | E074 | 11836 |
chr11 | 3806785 | 3807013 | E074 | 12194 |
chr11 | 3807152 | 3807248 | E074 | 12561 |
chr11 | 3807334 | 3807479 | E074 | 12743 |
chr11 | 3807483 | 3807563 | E074 | 12892 |
chr11 | 3807894 | 3808458 | E074 | 13303 |
chr11 | 3819951 | 3820047 | E081 | 25360 |
chr11 | 3820115 | 3820208 | E081 | 25524 |
chr11 | 3816045 | 3816125 | E082 | 21454 |
chr11 | 3816400 | 3816450 | E082 | 21809 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 3817385 | 3819636 | E067 | 22794 |
chr11 | 3828853 | 3831193 | E067 | 34262 |
chr11 | 3817385 | 3819636 | E068 | 22794 |
chr11 | 3828853 | 3831193 | E068 | 34262 |
chr11 | 3817385 | 3819636 | E069 | 22794 |
chr11 | 3828853 | 3831193 | E069 | 34262 |
chr11 | 3817385 | 3819636 | E070 | 22794 |
chr11 | 3828853 | 3831193 | E070 | 34262 |
chr11 | 3817385 | 3819636 | E071 | 22794 |
chr11 | 3828853 | 3831193 | E071 | 34262 |
chr11 | 3817385 | 3819636 | E072 | 22794 |
chr11 | 3817385 | 3819636 | E073 | 22794 |
chr11 | 3828853 | 3831193 | E073 | 34262 |
chr11 | 3817385 | 3819636 | E074 | 22794 |
chr11 | 3828853 | 3831193 | E074 | 34262 |
chr11 | 3817385 | 3819636 | E081 | 22794 |
chr11 | 3817385 | 3819636 | E082 | 22794 |
chr11 | 3828853 | 3831193 | E082 | 34262 |