SNP Detail Info-rs17654071

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.154396776A>G
GRCh37.p13 chr 1	NC_000001.10:g.154369252A>G

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.834	G=0.166
1000Genomes	American	Sub	694	A=0.510	G=0.490
1000Genomes	East Asian	Sub	1008	A=0.329	G=0.671
1000Genomes	Europe	Sub	1006	A=0.534	G=0.466
1000Genomes	Global	Study-wide	5008	A=0.556	G=0.444
1000Genomes	South Asian	Sub	978	A=0.470	G=0.530
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.545	G=0.455
The Genome Aggregation Database	African	Sub	8702	A=0.800	G=0.200
The Genome Aggregation Database	American	Sub	838	A=0.530	G=0.470
The Genome Aggregation Database	East Asian	Sub	1600	A=0.367	G=0.632
The Genome Aggregation Database	Europe	Sub	18442	A=0.551	G=0.449
The Genome Aggregation Database	Global	Study-wide	29882	A=0.611	G=0.388
The Genome Aggregation Database	Other	Sub	300	A=0.430	G=0.570
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.657	G=0.342
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.528	G=0.472

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID	p-value	Traits	Study
rs17654071	0.000353	alcohol dependence	24277619

eQTL of rs17654071 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs17654071 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	154381453	154381503	E067	12201
chr1	154381848	154381941	E067	12596
chr1	154382117	154382192	E067	12865
chr1	154390594	154391509	E067	21342
chr1	154391624	154393122	E067	22372
chr1	154393357	154393664	E067	24105
chr1	154393728	154393817	E067	24476
chr1	154394134	154394292	E067	24882
chr1	154394684	154394789	E067	25432
chr1	154394967	154395363	E067	25715
chr1	154395436	154395499	E067	26184
chr1	154395544	154395598	E067	26292
chr1	154395885	154396482	E067	26633
chr1	154396748	154396950	E067	27496
chr1	154397216	154397270	E067	27964
chr1	154399716	154400696	E067	30464
chr1	154400830	154400990	E067	31578
chr1	154401218	154401329	E067	31966
chr1	154401499	154402235	E067	32247
chr1	154402530	154402598	E067	33278
chr1	154402718	154402821	E067	33466
chr1	154402835	154402959	E067	33583
chr1	154402972	154403119	E067	33720
chr1	154324632	154324745	E068	-44507
chr1	154381453	154381503	E068	12201
chr1	154381848	154381941	E068	12596
chr1	154382117	154382192	E068	12865
chr1	154382753	154382940	E068	13501
chr1	154383020	154383132	E068	13768
chr1	154387145	154387317	E068	17893
chr1	154387511	154387575	E068	18259
chr1	154387598	154387658	E068	18346
chr1	154387959	154387999	E068	18707
chr1	154388978	154389032	E068	19726
chr1	154389183	154389237	E068	19931
chr1	154389302	154389406	E068	20050
chr1	154389544	154389598	E068	20292
chr1	154389745	154389801	E068	20493
chr1	154389820	154389938	E068	20568
chr1	154390594	154391509	E068	21342
chr1	154391624	154393122	E068	22372
chr1	154393357	154393664	E068	24105
chr1	154393728	154393817	E068	24476
chr1	154394967	154395363	E068	25715
chr1	154395436	154395499	E068	26184
chr1	154395544	154395598	E068	26292
chr1	154395885	154396482	E068	26633
chr1	154396748	154396950	E068	27496
chr1	154397216	154397270	E068	27964
chr1	154399716	154400696	E068	30464
chr1	154400830	154400990	E068	31578
chr1	154401218	154401329	E068	31966
chr1	154401499	154402235	E068	32247
chr1	154402530	154402598	E068	33278
chr1	154405027	154406213	E068	35775
chr1	154406881	154407584	E068	37629
chr1	154324632	154324745	E069	-44507
chr1	154382753	154382940	E069	13501
chr1	154383020	154383132	E069	13768
chr1	154387145	154387317	E069	17893
chr1	154387511	154387575	E069	18259
chr1	154387598	154387658	E069	18346
chr1	154390594	154391509	E069	21342
chr1	154391624	154393122	E069	22372
chr1	154393357	154393664	E069	24105
chr1	154393728	154393817	E069	24476
chr1	154394134	154394292	E069	24882
chr1	154394684	154394789	E069	25432
chr1	154394967	154395363	E069	25715
chr1	154395436	154395499	E069	26184
chr1	154395544	154395598	E069	26292
chr1	154395885	154396482	E069	26633
chr1	154396748	154396950	E069	27496
chr1	154397216	154397270	E069	27964
chr1	154399716	154400696	E069	30464
chr1	154400830	154400990	E069	31578
chr1	154401218	154401329	E069	31966
chr1	154401499	154402235	E069	32247
chr1	154402530	154402598	E069	33278
chr1	154402718	154402821	E069	33466
chr1	154402835	154402959	E069	33583
chr1	154402972	154403119	E069	33720
chr1	154403332	154404828	E069	34080
chr1	154405027	154406213	E069	35775
chr1	154324632	154324745	E070	-44507
chr1	154370642	154370765	E070	1390
chr1	154370821	154370863	E070	1569
chr1	154399716	154400696	E070	30464
chr1	154400830	154400990	E070	31578
chr1	154401218	154401329	E070	31966
chr1	154401499	154402235	E070	32247
chr1	154402530	154402598	E070	33278
chr1	154402718	154402821	E070	33466
chr1	154402835	154402959	E070	33583
chr1	154402972	154403119	E070	33720
chr1	154403332	154404828	E070	34080
chr1	154324632	154324745	E071	-44507
chr1	154381453	154381503	E071	12201
chr1	154381848	154381941	E071	12596
chr1	154382117	154382192	E071	12865
chr1	154382753	154382940	E071	13501
chr1	154383020	154383132	E071	13768
chr1	154386371	154386412	E071	17119
chr1	154386523	154386573	E071	17271
chr1	154389745	154389801	E071	20493
chr1	154389820	154389938	E071	20568
chr1	154390036	154390086	E071	20784
chr1	154390594	154391509	E071	21342
chr1	154391624	154393122	E071	22372
chr1	154393357	154393664	E071	24105
chr1	154393728	154393817	E071	24476
chr1	154394134	154394292	E071	24882
chr1	154394684	154394789	E071	25432
chr1	154394967	154395363	E071	25715
chr1	154395436	154395499	E071	26184
chr1	154395544	154395598	E071	26292
chr1	154397216	154397270	E071	27964
chr1	154399716	154400696	E071	30464
chr1	154400830	154400990	E071	31578
chr1	154401218	154401329	E071	31966
chr1	154401499	154402235	E071	32247
chr1	154402530	154402598	E071	33278
chr1	154405027	154406213	E071	35775
chr1	154324632	154324745	E072	-44507
chr1	154381453	154381503	E072	12201
chr1	154381848	154381941	E072	12596
chr1	154382117	154382192	E072	12865
chr1	154387145	154387317	E072	17893
chr1	154387511	154387575	E072	18259
chr1	154387598	154387658	E072	18346
chr1	154388978	154389032	E072	19726
chr1	154389183	154389237	E072	19931
chr1	154389302	154389406	E072	20050
chr1	154389544	154389598	E072	20292
chr1	154390594	154391509	E072	21342
chr1	154391624	154393122	E072	22372
chr1	154393357	154393664	E072	24105
chr1	154393728	154393817	E072	24476
chr1	154395436	154395499	E072	26184
chr1	154395544	154395598	E072	26292
chr1	154395885	154396482	E072	26633
chr1	154397216	154397270	E072	27964
chr1	154397740	154397918	E072	28488
chr1	154399716	154400696	E072	30464
chr1	154400830	154400990	E072	31578
chr1	154401218	154401329	E072	31966
chr1	154401499	154402235	E072	32247
chr1	154405027	154406213	E072	35775
chr1	154321411	154321451	E073	-47801
chr1	154321544	154321653	E073	-47599
chr1	154321735	154321791	E073	-47461
chr1	154322332	154322377	E073	-46875
chr1	154382753	154382940	E073	13501
chr1	154383020	154383132	E073	13768
chr1	154389745	154389801	E073	20493
chr1	154389820	154389938	E073	20568
chr1	154390594	154391509	E073	21342
chr1	154393357	154393664	E073	24105
chr1	154393728	154393817	E073	24476
chr1	154394134	154394292	E073	24882
chr1	154394684	154394789	E073	25432
chr1	154394967	154395363	E073	25715
chr1	154395436	154395499	E073	26184
chr1	154395544	154395598	E073	26292
chr1	154395885	154396482	E073	26633
chr1	154396748	154396950	E073	27496
chr1	154397216	154397270	E073	27964
chr1	154399716	154400696	E073	30464
chr1	154400830	154400990	E073	31578
chr1	154401218	154401329	E073	31966
chr1	154401499	154402235	E073	32247
chr1	154405027	154406213	E073	35775
chr1	154406881	154407584	E073	37629
chr1	154381453	154381503	E074	12201
chr1	154381848	154381941	E074	12596
chr1	154383020	154383132	E074	13768
chr1	154387145	154387317	E074	17893
chr1	154387511	154387575	E074	18259
chr1	154387598	154387658	E074	18346
chr1	154388978	154389032	E074	19726
chr1	154389183	154389237	E074	19931
chr1	154389302	154389406	E074	20050
chr1	154389544	154389598	E074	20292
chr1	154389745	154389801	E074	20493
chr1	154390594	154391509	E074	21342
chr1	154391624	154393122	E074	22372
chr1	154393357	154393664	E074	24105
chr1	154393728	154393817	E074	24476
chr1	154394134	154394292	E074	24882
chr1	154394684	154394789	E074	25432
chr1	154394967	154395363	E074	25715
chr1	154395436	154395499	E074	26184
chr1	154395544	154395598	E074	26292
chr1	154395885	154396482	E074	26633
chr1	154396748	154396950	E074	27496
chr1	154399716	154400696	E074	30464
chr1	154400830	154400990	E074	31578
chr1	154401218	154401329	E074	31966
chr1	154401499	154402235	E074	32247
chr1	154402530	154402598	E074	33278
chr1	154402718	154402821	E074	33466
chr1	154405027	154406213	E074	35775
chr1	154406881	154407584	E074	37629
chr1	154324443	154324493	E081	-44759
chr1	154324632	154324745	E081	-44507
chr1	154390594	154391509	E081	21342
chr1	154391624	154393122	E081	22372
chr1	154402718	154402821	E081	33466
chr1	154402835	154402959	E081	33583
chr1	154402972	154403119	E081	33720
chr1	154406881	154407584	E081	37629
chr1	154416115	154416628	E081	46863
chr1	154399716	154400696	E082	30464

rs17654071

Genomic Coordinates

Population Frequency

P-Value

eQTL of rs17654071 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs17654071 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)